As a new system mode to promote technological innovation, the model of IUR (Industry-University Research) cooperation is one of the important ways to improve the rate of technology transfer. In order to study the influencing factors of scientific and technological achievements in the mode of IUR cooperation, this paper uses social benefits and economic benefits to measure the transformation of scientific and technological achievements, and uses the university scientific research capacity, the benefits of enterprises, the absorptive capacity of enterprises, the close degree between IUR subjects, and the external environment of IUR cooperation to measure the influencing factors of transformation of scientific and technological achievements, besides, we select some more detailed latent variables to construct the structural equation. The results show that all these five factors will affect the transformation of scientific and technological achievements, but the impact of economic efficiency is small, which can only improve social benefits; In addition, the influence of university scientific research ability on social benefits is the largest while the effect of enterprise absorptive capacity on economic benefits is the largest.