Overloaded and stressed: whole-cell considerations for bacterial synthetic biology

被引:165
作者
Borkowski, Olivier [1 ,2 ]
Ceroni, Francesca [1 ,2 ]
Stan, Guy-Bart [1 ,2 ]
Ellis, Tom [1 ,2 ]
机构
[1] Imperial Coll London, Ctr Synthet Biol & Innovat, London, England
[2] Imperial Coll London, Dept Bioengn, London, England
基金
英国工程与自然科学研究理事会;
关键词
ESCHERICHIA-COLI; GENE-EXPRESSION; CIRCUIT PERFORMANCE; GROWTH; DESIGN; IMPLEMENTATION; PROTEINS; DYNAMICS; CLUSTER; MODEL;
D O I
10.1016/j.mib.2016.07.009
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The predictability and robustness of engineered bacteria depend on the many interactions between synthetic constructs and their host cells. Expression from synthetic constructs is an unnatural load for the host that typically reduces growth, triggers stresses and leads to decrease in performance or failure of engineered cells. Work in systems and synthetic biology has now begun to address this through new tools, methods and strategies that characterise and exploit host construct interactions in bacteria. Focusing on work in E. coli, we review here a selection of the recent developments in this area, highlighting the emerging issues and describing the new solutions that are now making the synthetic biology community consider the cell just as much as they consider the construct.
引用
收藏
页码:123 / 130
页数:8
相关论文
共 42 条
[1]   Inflating bacterial cells by increased protein synthesis [J].
Basan, Markus ;
Zhu, Manlu ;
Dai, Xiongfeng ;
Warren, Mya ;
Sevin, Daniel ;
Wang, Yi-Ping ;
Hwa, Terence .
MOLECULAR SYSTEMS BIOLOGY, 2015, 11 (10)
[2]   Rapid and Efficient One-Step Metabolic Pathway Integration in E-coli [J].
Bassalo, Marcelo C. ;
Garst, Andrew D. ;
Halweg-Edwards, Andrea L. ;
Grau, William C. ;
Domaille, Dylan W. ;
Mutalik, Vivek K. ;
Arkin, Adam P. ;
Gill, Ryan T. .
ACS SYNTHETIC BIOLOGY, 2016, 5 (07) :561-568
[3]   Rewritable digital data storage in live cells via engineered control of recombination directionality [J].
Bonnet, Jerome ;
Subsoontorn, Pakpoom ;
Endy, Drew .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (23) :8884-8889
[4]   Tunable protein degradation in bacteria [J].
Cameron, D. Ewen ;
Collins, James J. .
NATURE BIOTECHNOLOGY, 2014, 32 (12) :1276-U149
[5]  
Carbonell-Ballestero M, 2015, NUCLEIC ACIDS RES
[6]   Effects of Genetic Variation on the E-coli Host-Circuit Interface [J].
Cardinale, Stefano ;
Joachimiak, Marcin Pawel ;
Arkin, Adam Paul .
CELL REPORTS, 2013, 4 (02) :231-237
[7]   Empirical model and in vivo characterization of the bacterial response to synthetic gene expression show that ribosome allocation limits growth rate [J].
Carrera, Javier ;
Rodrigo, Guillermo ;
Singh, Vijai ;
Kirov, Boris ;
Jaramillo, Alfonso .
BIOTECHNOLOGY JOURNAL, 2011, 6 (07) :773-783
[8]  
Ceroni F, 2015, NAT METHODS, V12, P415, DOI [10.1038/NMETH.3339, 10.1038/nmeth.3339]
[9]   Queueing up for enzymatic processing: correlated signaling through coupled degradation [J].
Cookson, Natalie A. ;
Mather, William H. ;
Danino, Tal ;
Mondragon-Palomino, Octavio ;
Williams, Ruth J. ;
Tsimring, Lev S. ;
Hasty, Jeff .
MOLECULAR SYSTEMS BIOLOGY, 2011, 7
[10]   Engineering dynamic pathway regulation using stress-response promoters [J].
Dahl, Robert H. ;
Zhang, Fuzhong ;
Alonso-Gutierrez, Jorge ;
Baidoo, Edward ;
Batth, Tanveer S. ;
Redding-Johanson, Alyssa M. ;
Petzold, Christopher J. ;
Mukhopadhyay, Aindrila ;
Lee, Taek Soon ;
Adams, Paul D. ;
Keasling, Jay D. .
NATURE BIOTECHNOLOGY, 2013, 31 (11) :1039-+