Methods included: Sandardizing computational reuse and portability with the Common Workflow Language

被引：67

作者：

Crusoe, Michael R. ^{[1
,2
,3
]}

Abeln, Sanne ^{[4
]}

Iosup, Alexandru ^{[1
]}

Amstutz, Peter ^{[5
]}

Chilton, John ^{[6
]}

Tijanic, Nebojsa ^{[7
]}

Menager, Herve ^{[8
]}

Soiland-Reyes, Stian ^{[9
,10
]}

Gavrilovic, Bogdan ^{[7
]}

Goble, Carole ^{[11
]}

机构：

[1] Vrije Univ Amsterdam, Dept Comp Sci, Amsterdam, Netherlands

[2] Software Freedom Conservancy Inc, Brooklyn, NY 11201 USA

[3] DTL Projects, Compute Platform ELIXIR NL, Utrecht, Netherlands

[4] Vrije Univ Amsterdam, Dept Comp Sci, Bioinformat, Amsterdam, Netherlands

[5] Curii Corp, Somerville, MA USA

[6] Penn State Univ, Nekrutenko Lab, Dept Biochem & Mol Biol, State Coll, PA USA

[7] Seven Bridges Genorn Inc, Charlestown, MA USA

[8] Univ Paris, Inst Pasteur, Bioinformat & Biostat Hub, F-75015 Paris, France

[9] Univ Manchester, Dept Comp Sci, Manchester, Lancs, England

[10] Univ Amsterdam, Informat Inst, Amsterdam, Netherlands

[11] Univ Manchester, Dept Comp Sci, Comp Sci, Manchester, Lancs, England

来源：

COMMUNICATIONS OF THE ACM | 2022年 / 65卷 / 06期

基金：

英国工程与自然科学研究理事会;

关键词：

D O I：

10.1145/3486897

中图分类号：

TP3 [计算技术、计算机技术];

学科分类号：

0812 ;

摘要：

引用

页码：54 / +

页数：10

共 35 条

[1] The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update [J].

Afgan, Enis ;

Baker, Dannon ;

Batut, Berenice ;

van den Beek, Marius ;

Bouvier, Dave ;

Cech, Martin ;

Chilton, John ;

Clements, Dave ;

Coraor, Nate ;

Gruening, Bjoern A. ;

Guerler, Aysam ;

Hillman-Jackson, Jennifer ;

Hiltemann, Saskia ;

Jalili, Vahid ;

Rasche, Helena ;

Soranzo, Nicola ;

Goecks, Jeremy ;

Taylor, James ;

Nekrutenko, Anton ;

Blankenberg, Daniel .

NUCLEIC ACIDS RESEARCH, 2018, 46 (W1) :W537-W544

[2]

[Anonymous], 2012, Datenbank-Spektrum, DOI [DOI 10.1007/S13222-012-0100-Z, 10.1007/s13222-012-0100-z]

[3]

[Anonymous], 2020, IEEE STANDARD BIOINF, DOI [10.1109/IEEESTD.2020.9094416, DOI 10.1109/IEEESTD.2020.9094416]

[4]

[Anonymous], POSIX12008 IEEE OP G

[5] Parsl: Pervasive Parallel Programming in Python']Python [J].

Babuji, Yadu ;

Woodard, Anna ;

Li, Zhuozhao ;

Katz, Daniel S. ;

Clifford, Ben ;

Kumar, Rohan ;

Lacinski, Lukasz ;

Chard, Ryan ;

Wozniak, Justin M. ;

Foster, Ian ;

Wilde, Michael ;

Chard, Kyle .

HPDC'19: PROCEEDINGS OF THE 28TH INTERNATIONAL SYMPOSIUM ON HIGH-PERFORMANCE PARALLEL AND DISTRIBUTED COMPUTING, 2019, :25-36

[6] Using a suite of ontologies for preserving workflow-centric research objects [J].

Belhajjame, Khalid ;

Zhao, Jun ;

Garijo, Daniel ;

Gamble, Matthew ;

Hettne, Kristina ;

Palma, Raul ;

Mina, Eleni ;

Corcho, Oscar ;

Gomez-Perez, Jose Manuel ;

Bechhofer, Sean ;

Klyne, Graham ;

Goble, Carole .

JOURNAL OF WEB SEMANTICS, 2015, 32 :16-42

[7]

Bell T., 2017, CERNITNOTE2018004

[8]

Berthold MR., 2009, ACM SIGKDD EXPLOR NE, V11, P26, DOI DOI 10.1145/1656274.1656280

[9] StreamFlow: Cross-Breeding Cloud With HPC [J].

Colonnelli, Iacopo ;

Cantalupo, Barbara ;

Merelli, Ivan ;

Aldinucci, Marco .

IEEE TRANSACTIONS ON EMERGING TOPICS IN COMPUTING, 2021, 9 (04) :1723-1737

[10]

Couvares P., 2007, Workflows for e-Science, P357, DOI DOI 10.1007/978-1-84628-757-222

← 1 2 3 4 →