Pyrene functionalized molecular beacon with pH-sensitive i-motif in a loop

被引:17
作者
Dembska, Anna [1 ]
Juskowiak, Bernard [1 ]
机构
[1] Adam Mickiewicz Univ, Fac Chem, PL-61614 Poznan, Poland
关键词
Excimer fluorescence; Molecular beacon; i-motif; pH; DNA NANOMACHINE; NUCLEIC-ACIDS; BINARY PROBES; LIVING CELLS; G-QUADRUPLEX; DRIVEN; FLUORESCENCE; SEQUENCES; ONCOGENE; DESIGN;
D O I
10.1016/j.saa.2015.06.041
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
In this work, we present a spectral characterization of pH-sensitive system, which combines the i-motif properties with the spatially sensitive fluorescence signal of pyrene molecules attached to hairpin ends. The excimer production (fluorescence max. similar to 480 nm) by pyrene labels at the ends of the molecular beacon is driven by pH-dependent i-motif formation in the loop. To illustrate the performance and reversible work of our systems, we performed the experiments with repeatedly pH cycling between pH values of 7.5 +/- 0.3 and 6.5 +/- 0.3. The sensor gives analytical response in excimer-monomer switching mode in narrow pH range (1.5 pH units) and exhibits high pH resolution (0.1 pH unit). (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:928 / 933
页数:6
相关论文
共 27 条
[1]   EXCIMER FLUORESCENCE .2. LIFETIME STUDIES OF PYRENE SOLUTIONS [J].
BIRKS, JB ;
MUNRO, IH ;
DYSON, DJ .
PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1963, 275 (1360) :575-+
[2]   Making sense of G-quadruplex and i-motif functions in oncogene promoters [J].
Brooks, Tracy A. ;
Kendrick, Samantha ;
Hurley, Laurence .
FEBS JOURNAL, 2010, 277 (17) :3459-3469
[3]   Pyrene excimer signaling molecular beacons for probing nucleic acids [J].
Conlon, Patrick ;
Yang, Chaoyong James ;
Wu, Yanrong ;
Chen, Yan ;
Martinez, Karen ;
Kim, Youngmi ;
Stevens, Nathan ;
Marti, Angel A. ;
Jockusch, Steffen ;
Turro, Nicholas J. ;
Tan, Weihong .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (01) :336-342
[4]  
Dembska A., 2014, COLL S SER, V14, P305
[5]  
Dembska A., 2014, P 41 INT C SCCE, P697
[6]   Spectroscopic Characterization of i-motif Forming c-myc Derived Sequences Double-Labeled with Pyrene [J].
Dembska, Anna ;
Rzepecka, Patrycja ;
Juskowiak, Bernard .
JOURNAL OF FLUORESCENCE, 2013, 23 (04) :807-812
[7]   Molecular beacon: a multitask probe [J].
Goel, G ;
Kumar, A ;
Puniya, AK ;
Chen, W ;
Singh, K .
JOURNAL OF APPLIED MICROBIOLOGY, 2005, 99 (03) :435-442
[8]   The i-motif in nucleic acids [J].
Guéron, M ;
Leroy, JL .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2000, 10 (03) :326-331
[9]   Formation of pseudosymmetrical G-quadruplex and i-motif structures in the proximal promoter region of the RET oncogene [J].
Guo, Kexiao ;
Pourpak, Alan ;
Beetz-Rogers, Kara ;
Gokhale, Vijay ;
Sun, Daekyu ;
Hurley, Laurence H. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (33) :10220-10228
[10]   Binary Probes for Nucleic Acid Analysis [J].
Kolpashchikov, Dmitry M. .
CHEMICAL REVIEWS, 2010, 110 (08) :4709-4723