Capillary crystallization and molecular-replacement solution of haemoglobin II from the clam Lucina pectinata

被引:18
作者
Gavira, JA
de Jesus, W
Camara-Artigas, A
López-Garriga, J
García-Ruiz, JM
机构
[1] PT Ciencias Salud, CSIC, Lab Estudios Cristalog, Granada, Spain
[2] Univ Puerto Rico, Dept Quim, Mayaguez, PR 00681 USA
[3] Univ Almeria, Dept Quim Fis Bioquim & Quim Inorgan, Almeria 04120, Spain
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2006年 / 62卷
关键词
D O I
10.1107/S1744309106002648
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Haemoglobin II is one of three haemoglobins present in the cytoplasm of the Lucina pectinata mollusc that inhabits the Caribbean coast. Using HBII purified from its natural source, crystallization screening was performed using the counter-diffusion method with capillaries of 0.2 mm inner diameter. Crystals of HbII suitable for data collection and structure determination were grown in the presence of agarose at 0.1% (w/v) in order to improve their quality. The crystals belong to the tetragonal space group P4(2)2(1)2, with unit-cell parameters a = b = 73.92, c = 152.35 angstrom, and diffracted X-rays to a resolution of better than 2.0 A. The asymmetric unit is a homodimer with a corresponding Matthews coefficient (V-M) of 3.15 angstrom(3) Da(-1) and a solvent content of 61% by volume.
引用
收藏
页码:196 / 199
页数:4
相关论文
共 17 条
  • [11] Refinement of macromolecular structures by the maximum-likelihood method
    Murshudov, GN
    Vagin, AA
    Dodson, EJ
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1997, 53 : 240 - 255
  • [12] Processing of X-ray diffraction data collected in oscillation mode
    Otwinowski, Z
    Minor, W
    [J]. MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 : 307 - 326
  • [13] Tyrosine B10 and heme-ligand interactions of Lucina pectinata hemoglobin II:: control of heme reactivity
    Pietri, R
    Granell, L
    Cruz, A
    De Jesús, W
    Lewis, A
    Leon, R
    Cadilla, CL
    Garriga, JL
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2005, 1747 (02): : 195 - 203
  • [14] READ KRH, 1965, COMP BIOCHEM PHYSIOL, V15, P137
  • [15] Structural bases for sulfide recognition in Lucina pectinata hemoglobin I
    Rizzi, M
    Wittenberg, JB
    Coda, A
    Ascenzi, P
    Bolognesi, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1996, 258 (01) : 1 - 5
  • [16] STRUCTURE OF THE SULFIDE-REACTIVE HEMOGLOBIN FROM THE CLAM LUCINA-PECTINATA - CRYSTALLOGRAPHIC ANALYSIS AT 1.5-ANGSTROM RESOLUTION
    RIZZI, M
    WITTENBERG, JB
    CODA, A
    FASANO, M
    ASCENZI, P
    BOLOGNESI, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1994, 244 (01) : 86 - 99
  • [17] The cDNA-derived amino acid sequence of hemoglobin II from Lucina pectinata
    Torres-Mercado, E
    Renta, JY
    Rodríguez, Y
    López-Garriga, J
    Cadilla, CL
    [J]. JOURNAL OF PROTEIN CHEMISTRY, 2003, 22 (7-8): : 683 - 690