L-cysteine transporter-PCR to detect hydrogen sulfide-producing Campylobacter fetus

被引:11
作者
Farace, Pablo D. [1 ]
Morsella, Claudia G. [2 ]
Cravero, Silvio L. [1 ]
Sioya, Bernardo A. [1 ]
Amadio, Ariel F. [3 ]
Paolicchi, Fernando A. [2 ]
Gioffre, Andrea K. [1 ]
机构
[1] Consejo Nacl Invest Cient & Tecn, Inst Agrobiotecnol & Biol Mol IABIMO, INTA, Buenos Aires, DF, Argentina
[2] Univ Nacl Mar del Plata, Unidad Integrada INTA, Lab Bacteriol, Grp Sanidad Anim, Buenos Aires, DF, Argentina
[3] Consejo Nacl Invest Cient & Tecn, Estn Expt Agr INTA, Rafaela, Santa Fe, Argentina
来源
PEERJ | 2019年 / 7卷
关键词
PCR; Sulfide production; Molecular differentiation; Bovine genital campylobacteriosis; IDENTIFICATION; DIFFERENTIATION; SEQUENCE; HUMANS; MAUVE; ASSAY;
D O I
10.7717/peerj.7820
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Phenotypic differences between Campylobacter fetus fetus and C. fetus venerealis subspecies allow the differential diagnosis of bovine genital campylobacteriosis. The hydrogen sulfide production, for example, is a trait exclusive to C. fetus fetus and C. fetus venerealis biovar intermedius. This gas that can be biochemically tested can be produced from L-cysteine (L-Cys). Herein, we report a novel multiplex-PCR to differentiate C. fetus based on the evaluation of a deletion of an ATP-binding cassette-type L-Cys transporter that could be involved in hydrogen sulfide production, as previously described. A wet lab approach combined with an in silico whole genome data analysis showed complete agreement between this L-Cys transporter-PCR and the hydrogen sulfide production biochemical test. This multiplex-PCR may complement the tests currently employed for the differential diagnosis of C. fetus.
引用
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页数:21
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共 26 条
  • [1] Discovery of insertion element ISCfe1:: a new tool for Campylobacter fetus subspecies differentiation
    Abril, C.
    Vilei, E. M.
    Brodard, I.
    Burnens, A.
    Frey, J.
    Miserez, R.
    [J]. CLINICAL MICROBIOLOGY AND INFECTION, 2007, 13 (10) : 993 - 1000
  • [2] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [3] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [4] RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
    Brettin, Thomas
    Davis, James J.
    Disz, Terry
    Edwards, Robert A.
    Gerdes, Svetlana
    Olsen, Gary J.
    Olson, Robert
    Overbeek, Ross
    Parrello, Bruce
    Pusch, Gordon D.
    Shukla, Maulik
    Thomason, James A., III
    Stevens, Rick
    Vonstein, Veronika
    Wattam, Alice R.
    Xia, Fangfang
    [J]. SCIENTIFIC REPORTS, 2015, 5
  • [5] Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    Darling, ACE
    Mau, B
    Blattner, FR
    Perna, NT
    [J]. GENOME RESEARCH, 2004, 14 (07) : 1394 - 1403
  • [6] Campylobacter fetus subsp. testudinum subsp. nov., isolated from humans and reptiles
    Fitzgerald, Collette
    Tu, Zheng Chao
    Patrick, Mary
    Stiles, Tracy
    Lawson, Andy J.
    Santovenia, Monica
    Gilbert, Maarten J.
    van Bergen, Marcel
    Joyce, Kevin
    Pruckler, Janet
    Stroika, Steven
    Duim, Birgitta
    Miller, William G.
    Loparev, Vladimir
    Sinnige, Jan C.
    Fields, Patricia I.
    Tauxe, Robert V.
    Blaser, Martin J.
    Wagenaar, Jaap A.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 : 2944 - 2948
  • [7] Molecular detection of antimicrobial resistance
    Fluit, AC
    Visser, MR
    Schmitz, FJ
    [J]. CLINICAL MICROBIOLOGY REVIEWS, 2001, 14 (04) : 836 - 871
  • [8] Homologous Recombination between Genetically Divergent Campylobacter fetus Lineages Supports Host-Associated Speciation
    Gilbert, Maarten J.
    Duim, Birgitta
    van der Graaf-van Bloois, Linda
    Wagenaar, Jaap A.
    Zomer, Aldert L.
    [J]. GENOME BIOLOGY AND EVOLUTION, 2018, 10 (03): : 716 - 722
  • [9] A Genomic Island Defines Subspecies-Specific Virulence Features of the Host-Adapted Pathogen Campylobacter fetus subsp venerealis
    Gorkiewicz, Gregor
    Kienesberger, Sabine
    Schober, Caroline
    Scheicher, Sylvia R.
    Guelly, Christian
    Zechner, Rudolf
    Zechner, Ellen L.
    [J]. JOURNAL OF BACTERIOLOGY, 2010, 192 (02) : 502 - 517
  • [10] Evaluation of a PCR assay for identification and differentiation of Campylobacter fetus subspecies
    Hum, S
    Quinn, K
    Brunner, J
    On, SLW
    [J]. AUSTRALIAN VETERINARY JOURNAL, 1997, 75 (11) : 827 - 831