To What Extent are "Atoms in Molecules" Structures of Hydrocarbons Reproducible from the Promolecule Electron Densities?

被引:49
作者
Keyvani, Zahra Alimohammadi [1 ]
Shahbazian, Shant [1 ]
Zahedi, Mansour [1 ]
机构
[1] Shahid Beheshti Univ, Dept Pure Chem, Fac Chem, GC, POB 19395-4716, Tehran 19839, Iran
关键词
bond theory; computational chemistry; electron density; hydrocarbons; quantum theory; QUANTUM SIMILARITY MEASURES; AB-INITIO; CHARGE-DENSITY; CHEMICAL-BONDS; X-RAY; ENERGIES; DISTRIBUTIONS; PROCRYSTAL; TOPOLOGY; CRYSTALS;
D O I
10.1002/chem.201504862
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The atoms in molecules structures of 225 unsubstituted hydrocarbons are derived from both the optimized and the promolecule electron densities. A comparative analysis demonstrates that the molecular graphs derived from these two types of electron densities at the same geometry are equivalent for almost 90% of the hydrocarbons containing the same number and types of critical points. For the remaining 10% of molecules, it is demonstrated that by inducing small perturbations, through the variation of the used basis set or slight changes in the used geometry, the emerging molecular graphs from both densities are also equivalent. Interestingly, the (3, -1) critical point between two non-bonded hydrogen atoms, which triggered H-H bonding controversy is also observed in the promolecule densities of certain hydrocarbons. Evidently, the topology of the electron density is not dictated by chemical bonds or strong interactions and deformations induced by the interactions of atoms in molecules have a quite marginal role, virtually null, in shaping the general traits of the topology of molecular electron densities of the studied hydrocarbons, whereas the key factor is the underlying atomic densities.
引用
收藏
页码:5003 / 5009
页数:7
相关论文
共 61 条
[1]   Comparison of electron density properties in frozen and relaxed electronic distributions [J].
Alkorta, I ;
Elguero, J ;
Espinosa, E ;
Mata, I ;
Molins, E .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (04) :416-421
[2]  
Amat L, 1997, J COMPUT CHEM, V18, P2023, DOI 10.1002/(SICI)1096-987X(199712)18:16<2023::AID-JCC7>3.0.CO
[3]  
2-N
[4]  
Amat L, 1999, J COMPUT CHEM, V20, P911, DOI 10.1002/(SICI)1096-987X(19990715)20:9<911::AID-JCC2>3.0.CO
[5]  
2-O
[6]  
[Anonymous], 2008, Int. J. Chem. Model.
[7]  
[Anonymous], 2010, INT J CHEM MODEL
[8]   Six questions on topology in theoretical chemistry [J].
Ayers, Paul L. a ;
Boyd, Russell J. b ;
Bultinck, Patrick ;
Caffarel, Michel d ;
Carbo-Dorca, Ramon e ;
Causa, Mauro f ;
Cioslowski, Jerzy g ;
Contreras-Garcia, Julia h ;
Cooper, David L. i ;
Coppens, Philip j ;
Gatti, Carlo k ;
Grabowsky, Simon l ;
Lazzeretti, Paolo m ;
Macchi, Piero n ;
Martin Pendas, Angel o ;
Popelier, Paul L. A. pq ;
Ruedenberg, Klaus r ;
Rzepa, Henry s ;
Savin, Andreas h ;
Sax, Alexander t ;
Schwarz, W. H. Eugen uv ;
Shahbazian, Shant w ;
Silvi, Bernard h ;
Sola, Miquel e ;
Tsirelson, Vladimir x .
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2015, 1053 :2-16
[9]  
Bader R. F. W., 1994, ATOMS MOL QUANTUM TH
[10]   Pauli repulsions exist only in the eye of the beholder [J].
Bader, RFW .
CHEMISTRY-A EUROPEAN JOURNAL, 2006, 12 (10) :2896-2901