Rapid Genotyping of Human Papillomavirus by Desorption Electrospray Ionization Mass Spectrometry

被引:1
作者
Kim, Shin Hye [1 ,2 ]
Hong, Sun Pyo [3 ]
Cho, Woojae [3 ]
Kim, Jeongkwon [2 ]
Lee, Tae Geol [1 ]
Yoon, Sohee [1 ]
机构
[1] Korea Res Inst Stand & Sci KRISS, Ctr Nanobio Measurement, Daejeon 34113, South Korea
[2] Chungnam Natl Univ, Dept Chem, Daejeon 34134, South Korea
[3] GeneMatrix Inc, R&D Ctr, Seongnam 13543, South Korea
来源
BULLETIN OF THE KOREAN CHEMICAL SOCIETY | 2017年 / 38卷 / 06期
关键词
Desorption electrospray ionization; Mass spectrometry; Human papillomavirus; Restriction fragment mass polymorphism; SAMPLE PREPARATION;
D O I
10.1002/bkcs.11130
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
This study describes a new approach to rapidly detecting of human papillomavirus (HPV) DNA using desorption electrospray ionization mass spectrometry (DESI-MS) without sample preparation such as extraction or purification. Our strategy utilizes the ambient ionization mass spectrometry for ionizing and detecting oligonucleotides from restriction fragment mass polymorphism (RFMP) assay, and is to identify which HPV genotype from combinations of multiply charged ions of oligonucleotides. In DESI-MS, the spray solvent system operates at the stage of washing a complex mixture of polymerase chain reaction (PCR) products, so that the oligonucleotides can be detected without sample treatment. The study was verified to rapid diagnosis of cervical cancer by detecting and genotyping of HPV DNA based RFMP assay using DESI-MS.
引用
收藏
页码:603 / 606
页数:4
相关论文
共 19 条
  • [1] Bray F., 2001, GLOBOCAN 2000 CANC I, P1
  • [2] Combining desorption electrospray ionization mass spectrometry and nuclear magnetic resonance for differential metabolomics without sample preparation
    Chen, Huanwen
    Pan, Zhengzheng
    Talaty, Nari
    Raftery, Daniel
    Cooks, R. Graham
    [J]. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2006, 20 (10) : 1577 - 1584
  • [3] Crouse J., 1996, FOCUS, V9, P2
  • [4] Lipid Profiles of Canine Invasive Transitional Cell Carcinoma of the Urinary Bladder and Adjacent Normal Tissue by Desorption Electrospray Ionization Imaging Mass Spectrometry
    Dill, Allison L.
    Ifa, Demian R.
    Manicke, Nicholas E.
    Costa, Anthony B.
    Ramos-Vara, Jose A.
    Knapp, Deborah W.
    Cooks, R. Graham
    [J]. ANALYTICAL CHEMISTRY, 2009, 81 (21) : 8758 - 8764
  • [5] Guo XH, 2005, NUCLEIC ACIDS RES, V33, P3659, DOI 10.1093/nar/gki671
  • [6] Detection of hepatitis B virus YMDD variants using mass spectrometric analysis of oligonucleotide fragments
    Hong, SP
    Kim, NK
    Hwang, SG
    Chung, HJ
    Kim, S
    Han, JH
    Kim, HT
    Rim, KS
    Kang, MS
    Yoo, W
    Kim, SO
    [J]. JOURNAL OF HEPATOLOGY, 2004, 40 (05) : 837 - 844
  • [7] High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry
    Hong, Sun Pyo
    Shin, Soo-Kyung
    Lee, Eun Hee
    Kim, Eun Ok
    Il Ji, Seung
    Chung, Hyun Jae
    Park, Sun Nie
    Yoo, Wangdon
    Folk, William R.
    Kim, Soo-Ok
    [J]. NATURE PROTOCOLS, 2008, 3 (09) : 1476 - 1484
  • [8] Desorption electrospray ionization and other ambient ionization methods: current progress and preview
    Ifa, Demian R.
    Wu, Chunping
    Ouyang, Zheng
    Cooks, R. Graham
    [J]. ANALYST, 2010, 135 (04) : 669 - 681
  • [9] Desorption electrospray ionization mass spectrometry for the analysis of pharmaceuticals and metabolites
    Kauppila, TJ
    Wiseman, JM
    Ketola, RA
    Kotiaho, T
    Cooks, RG
    Kostiainen, R
    [J]. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2006, 20 (03) : 387 - 392
  • [10] One-step detection and genotyping of human papillomavirus in cervical samples by reverse hybridization
    Laconi, S
    Greco, M
    Pellegrini-Bettoli, P
    Rais, M
    Laconi, E
    Pani, P
    [J]. DIAGNOSTIC MOLECULAR PATHOLOGY, 2001, 10 (03) : 200 - 206