Case Report: Novel RPGRIP1L Gene Mutations Identified by Whole Exome Sequencing in a Patient With Multiple Primary Tumors

被引:1
作者
Guo, Jiani [1 ]
Yang, Yu [1 ]
Ji, Zhuqing [1 ]
Yao, Mengchu [1 ]
Xia, Xiaotian [1 ]
Sha, Xiaofeng [2 ]
Huang, Mingde [1 ]
机构
[1] Nanjing Med Univ, Dept Med Oncol, Affiliated Huaian 1 Peoples Hosp, Huaian, Peoples R China
[2] Huaian Hongze Dist Peoples Hosp, Dept Med Oncol, Huaian, Peoples R China
关键词
RPGRIP1L; multiple primary tumors; somatic mutation; pancreatic adenocarcinoma; whole-exome sequencing;
D O I
10.3389/fgene.2021.620472
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A 78 years old Chinese woman with five different cancer types and a family history of malignancy was the subject of this study. Pancreatic adenocarcinoma and gingival squamous cell carcinoma tissues were obtained from the patient and sequenced using Whole Exome Sequencing. Whole exome sequencing identified 20 mutation sites in six candidate genes. Sanger Sequencing was used for further validation. The results verified six mutations in three genes, OBSCN, TTN, and RPGRIP1L, in at least one cancer type. Immunohistochemistry was used to verify protein expression. mRNA expression analysis using The Cancer Genome Atlas database revealed that RPGRIP1L was highly expressed in several cancer types, especially in pancreatic adenocarcinoma, and correlated with patient survival and sensitivity to paclitaxel, probably through the TGF-beta signaling pathway. The newly identified somatic mutations in RPGRIP1L might contribute to pathogenesis in the patients. Protein conformation simulation demonstrated that the alterations had caused the binding pocket at position 708 to change from concave to convex, which could restrict contraction and extension, and interfere with the physiological function of the protein. Further studies are required to determine the implication of RPGRIP1L in this family and in multiple primary tumors.
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页数:11
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共 28 条
[1]   The Ciliopathy Gene Ftm/Rpgrip1l Controls Mouse Forebrain Patterning via Region-Specific Modulation of Hedgehog/Gli Signaling [J].
Andreu-Cervera, Abraham ;
Anselme, Isabelle ;
Karam, Alice ;
Laclef, Christine ;
Catala, Martin ;
Schneider-Maunoury, Sylvie .
JOURNAL OF NEUROSCIENCE, 2019, 39 (13) :2398-2415
[2]   Mutations in the gene encoding the basal body protein RPGRIP1L, a nephrocystin-4 interactor, cause Joubert syndrome [J].
Arts, Heleen H. ;
Doherty, Dan ;
van Beersum, Sylvia E. C. ;
Parisi, Melissa A. ;
Letteboer, Stef J. F. ;
Gorden, Nicholas T. ;
Peters, Theo A. ;
Maerker, Tina ;
Voesenek, Krysta ;
Kartono, Aileen ;
Ozyurek, Hamit ;
Farin, Federico M. ;
Kroes, Hester Y. ;
Wolfrum, Uwe ;
Brunner, Han G. ;
Cremers, Frans P. M. ;
Glass, Ian A. ;
Knoers, Nine V. A. M. ;
Roepman, Ronald .
NATURE GENETICS, 2007, 39 (07) :882-888
[3]   The molecular motor Myosin Va interacts with the cilia-centrosomal protein RPGRIP1L [J].
Assis, L. H. P. ;
Silva-Junior, R. M. P. ;
Dolce, L. G. ;
Alborghetti, M. R. ;
Honorato, R. V. ;
Nascimento, A. F. Z. ;
Melo-Hanchuk, T. D. ;
Trindade, D. M. ;
Tonoli, C. C. C. ;
Santos, C. T. ;
Oliveira, P. S. L. ;
Larson, R. E. ;
Kobarg, J. ;
Espreafico, E. M. ;
Giuseppe, P. O. ;
Murakami, M. T. .
SCIENTIFIC REPORTS, 2017, 7
[4]  
Chan Gloria H J, 2018, Oncotarget, V9, P30649, DOI 10.18632/oncotarget.25769
[5]   The Ciliopathy Gene Rpgrip1l Is Essential for Hair Follicle Development [J].
Chen, Jiang ;
Laclef, Christine ;
Moncayo, Alejandra ;
Snedecor, Elizabeth R. ;
Yang, Ning ;
Li, Li ;
Takemaru, Ken-Ichi ;
Paus, Ralf ;
Schneider-Maunoury, Sylvie ;
Clark, Richard A. .
JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2015, 135 (03) :701-709
[6]   Genetic variants of PARP4 gene and PARP4P2 pseudogene in patients with multiple primary tumors including thyroid cancer [J].
Cirello, Valentina ;
Colombo, Carla ;
Pogliaghi, Gabriele ;
Proverbio, Maria Carla ;
Rossi, Stefania ;
Mussani, Elena ;
Tosi, Delfina ;
Bulfamante, Gaetano ;
Bonoldi, Emanuela ;
Gherardi, Giorgio ;
Persani, Luca ;
Fugazzola, Laura .
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS, 2019, 816
[7]   The ciliary gene RPGRIP1L is mutated in cerebello-oculo-renal syndrome (Joubert syndrome type B) and Meckel syndrome [J].
Delous, Marion ;
Baala, Lekbir ;
Salomon, Remi ;
Laclef, Christine ;
Vierkotten, Jeanette ;
Tory, Kalman ;
Golzio, Christelle ;
Lacoste, Tiphanie ;
Besse, Laurianne ;
Ozilou, Catherine ;
Moutkine, Imane ;
Hellman, Nathan E. ;
Anselme, Isabelle ;
Silbermann, Flora ;
Vesque, Christine ;
Gerhardt, Christoph ;
Rattenberry, Eleanor ;
Wolf, Matthias T. F. ;
Gubler, Marie Claire ;
Martinovic, Jelena ;
Encha-Razavi, Ferechte ;
Boddaert, Nathalie ;
Gonzales, Marie ;
Macher, Marie Alice ;
Nivet, Hubert ;
Champion, Gerard ;
Bertheleme, Jean Pierre ;
Niaudet, Patrick ;
McDonald, Fiona ;
Hildebrandt, Friedhelm ;
Johnson, Colin A. ;
Vekemans, Michel ;
Antignac, Corinne ;
Ruether, Ulrich ;
Schneider-Maunoury, Sylvie ;
Attie-Bitach, Tania ;
Saunier, Sophie .
NATURE GENETICS, 2007, 39 (07) :875-881
[8]   The Cancer Spliceome: Reprograming of Alternative Splicing in Cancer [J].
El Marabti, Ettaib ;
Younis, Ihab .
FRONTIERS IN MOLECULAR BIOSCIENCES, 2018, 5
[9]   pRRophetic: An R Package for Prediction of Clinical Chemotherapeutic Response from Tumor Gene Expression Levels [J].
Geeleher, Paul ;
Cox, Nancy ;
Huang, R. Stephanie .
PLOS ONE, 2014, 9 (09)
[10]   The transition zone protein Rpgrip1l regulates proteasomal activity at the primary cilium [J].
Gerhardt, Christoph ;
Lier, Johanna Maria ;
Burmuehl, Stephan ;
Struchtrup, Andreas ;
Deutschmann, Kathleen ;
Vetter, Maik ;
Leu, Tristan ;
Reeg, Sandra ;
Grune, Tilman ;
Ruether, Ulrich .
JOURNAL OF CELL BIOLOGY, 2015, 210 (01) :115-133