Mechanical squeezing of an elastomeric nanochannel device: numerical simulations and ionic current characterization

被引:12
作者
Manneschi, Chiara [1 ]
Fanzio, Paola [1 ]
Angeli, Elena [1 ]
Firpo, Giuseppe [1 ]
Ceseracciu, Luca [2 ]
Mussi, Valentina [1 ]
Repetto, Luca [1 ]
Valbusa, Ugo [1 ]
机构
[1] Univ Genoa, Dept Phys, Nanomed Labs, I-16146 Genoa, Italy
[2] IIT, I-16163 Genoa, Italy
关键词
Tuneable nanochannel; Finite element methods; Lab-on-chip; Plasma oxidation; Poly(dimethylsiloxane); SOFT LITHOGRAPHY; STAMP COLLAPSE; DNA; FABRICATION; MOLECULES;
D O I
10.1007/s10404-012-1018-3
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Peculiar transport phenomena appear at nanoscale, since surface effects strongly affect the behaviour of fluids. Electrostatic and steric interactions, capillary forces and entropic effects play a key role in the behaviour of fluids and biomolecules. Since these effects strongly depend on the size of the nanofluidic system, a careful characterization of the fluidic environment is necessary. Moreover, the possibility to dynamically modulate the size of nanochannels is very appealing in the field of biomolecule manipulation. Recently, we have developed a lab-on-chip made of poly(dimethylsiloxane) (PDMS). This polymeric device is based on a tuneable nanochannel able to dynamically change its dimension in order to fit the application of interest. In fact, a mechanical compression applied on the top of the elastomeric device squeezes the nanochannel, reducing the channel cross section and allowing a dynamical optimization of the nanostructures. In this paper, this squeezing process is fully characterized both numerically and experimentally. This analysis provides information on the reduction of the nanochannel dimensions induced by compression as a function of the work of adhesion and of the stiffness of the materials composing the device. Moreover, calculations demonstrate the possibility to predict the change of the nanochannel size and shape induced by the compression. The possibility to dynamically tune the channel size opens up new opportunities in biomolecular sensing or sieving and in the study of new hydrodynamics effects.
引用
收藏
页码:21 / 30
页数:10
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共 31 条
  • [1] DNA manipulation with elastomeric nanostructures fabricated by soft-moulding of a FIB-patterned stamp
    Angeli, Elena
    Manneschi, Chiara
    Repetto, Luca
    Firpo, Giuseppe
    Valbusa, Ugo
    [J]. LAB ON A CHIP, 2011, 11 (15) : 2625 - 2629
  • [2] The potential and challenges of nanopore sequencing
    Branton, Daniel
    Deamer, David W.
    Marziali, Andre
    Bayley, Hagan
    Benner, Steven A.
    Butler, Thomas
    Di Ventra, Massimiliano
    Garaj, Slaven
    Hibbs, Andrew
    Huang, Xiaohua
    Jovanovich, Stevan B.
    Krstic, Predrag S.
    Lindsay, Stuart
    Ling, Xinsheng Sean
    Mastrangelo, Carlos H.
    Meller, Amit
    Oliver, John S.
    Pershin, Yuriy V.
    Ramsey, J. Michael
    Riehn, Robert
    Soni, Gautam V.
    Tabard-Cossa, Vincent
    Wanunu, Meni
    Wiggin, Matthew
    Schloss, Jeffery A.
    [J]. NATURE BIOTECHNOLOGY, 2008, 26 (10) : 1146 - 1153
  • [3] Entropic recoil separation of long DNA molecules
    Cabodi, M
    Turner, SWP
    Craighead, HG
    [J]. ANALYTICAL CHEMISTRY, 2002, 74 (20) : 5169 - 5174
  • [4] Flexible fabrication and applications of polymer nanochannels and nanoslits
    Chantiwas, Rattikan
    Park, Sunggook
    Soper, Steven A.
    Kim, Byoung Choul
    Takayama, Shuichi
    Sunkara, Vijaya
    Hwang, Hyundoo
    Cho, Yoon-Kyoung
    [J]. CHEMICAL SOCIETY REVIEWS, 2011, 40 (07) : 3677 - 3702
  • [5] DIRECT MEASUREMENT OF INTERFACIAL INTERACTIONS BETWEEN SEMISPHERICAL LENSES AND FLAT SHEETS OF POLY(DIMETHYLSILOXANE) AND THEIR CHEMICAL DERIVATIVES
    CHAUDHURY, MK
    WHITESIDES, GM
    [J]. LANGMUIR, 1991, 7 (05) : 1013 - 1025
  • [6] Tuneable hydrophoretic separation using elastic deformation of poly(dimethylsiloxane)
    Choi, Sungyoung
    Park, Je-Kyun
    [J]. LAB ON A CHIP, 2009, 9 (13) : 1962 - 1965
  • [7] Nanofluidics: what is it and what can we expect from it?
    Eijkel, JCT
    van den Berg, A
    [J]. MICROFLUIDICS AND NANOFLUIDICS, 2005, 1 (03) : 249 - 267
  • [8] DNA detection with a polymeric nanochannel device
    Fanzio, Paola
    Mussi, Valentina
    Manneschi, Chiara
    Angeli, Elena
    Firpo, Giuseppe
    Repetto, Luca
    Valbusa, Ugo
    [J]. LAB ON A CHIP, 2011, 11 (17) : 2961 - 2966
  • [9] DNA conformation and base number simultaneously determined in a nanopore
    Fologea, Daniel
    Brandin, Eric
    Uplinger, James
    Branton, Daniel
    Li, Jiali
    [J]. ELECTROPHORESIS, 2007, 28 (18) : 3186 - 3192
  • [10] Molecular sieving in periodic free-energy landscapes created by patterned nanofilter arrays
    Fu, Jianping
    Yoo, Juhwan
    Han, Jongyoon
    [J]. PHYSICAL REVIEW LETTERS, 2006, 97 (01)