ADAR Proteins: Structure and Catalytic Mechanism

被引:54
作者
Goodman, Rena A. [1 ]
Macbeth, Mark R. [2 ]
Beal, Peter A. [1 ]
机构
[1] Univ Calif Davis, Dept Chem, Davis, CA 95616 USA
[2] Carnegie Mellon Univ, Dept Biol Sci, Pittsburgh, PA 15213 USA
来源
ADENOSINE DEAMINASES ACTING ON RNA (ADARS) AND A-TO-I EDITING | 2012年 / 353卷
关键词
DOUBLE-STRANDED-RNA; TRANSITION-STATE ANALOG; EDITING ADENOSINE-DEAMINASE; CRYSTAL-STRUCTURE; CYTIDINE DEAMINASE; INOSITOL HEXAKISPHOSPHATE; ESCHERICHIA-COLI; ACTIVE-SITE; UNWINDING ACTIVITY; BACILLUS-SUBTILIS;
D O I
10.1007/82_2011_144
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Since the discovery of the adenosine deaminase (ADA) acting on RNA (ADAR) family of proteins in 1988 (Bass and Weintraub, Cell 55:1089-1098, 1988) (Wagner et al. Proc Natl Acad Sci U S A 86:2647-2651, 1989), we have learned much about their structure and catalytic mechanism. However, much about these enzymes is still unknown, particularly regarding the selective recognition and processing of specific adenosines within substrate RNAs. While a crystal structure of the catalytic domain of human ADAR2 has been solved, we still lack structural data for an ADAR catalytic domain bound to RNA, and we lack any structural data for other ADARs. However, by analyzing the structural data that is available along with similarities to other deaminases, mutagenesis and other biochemical experiments, we have been able to advance the understanding of how these fascinating enzymes function.
引用
收藏
页码:1 / 33
页数:33
相关论文
共 108 条
[41]   MUTAGENIC ANALYSIS OF DOUBLE-STRANDED-RNA ADENOSINE-DEAMINASE, A CANDIDATE ENZYME FOR RNA EDITING OF GLUTAMATE-GATED ION-CHANNEL TRANSCRIPTS [J].
LAI, F ;
DRAKAS, R ;
NISHIKURA, K .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1995, 270 (29) :17098-17105
[42]   Crystal structure of the tRNA-specific adenosine deaminase from Streptocaccus pyagenes [J].
Lee, Won-Ho ;
Kim, Young Kwan ;
Nam, Ki Hyun ;
Priyadarshi, Amit ;
Lee, Eun Hye ;
Kim, Eunice Eunkyeong ;
Jeon, Young Ho ;
Cheong, Chaejoon ;
Hwang, Kwang Yeon .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2007, 68 (04) :1016-1019
[43]   Physical basis of structural and catalytic Zn-binding sites in proteins [J].
Lee, Yu-ming ;
Lim, Carmay .
JOURNAL OF MOLECULAR BIOLOGY, 2008, 379 (03) :545-553
[44]   Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities [J].
Lehmann, KA ;
Bass, BL .
BIOCHEMISTRY, 2000, 39 (42) :12875-12884
[45]   The importance of internal loops within RNA substrates of ADAR1 [J].
Lehmann, KA ;
Bass, BL .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 291 (01) :1-13
[46]   Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing [J].
Li, Jin Billy ;
Levanon, Erez Y. ;
Yoon, Jung-Ki ;
Aach, John ;
Xie, Bin ;
LeProust, Emily ;
Zhang, Kun ;
Gao, Yuan ;
Church, George M. .
SCIENCE, 2009, 324 (5931) :1210-1213
[47]   CRYSTAL-STRUCTURE OF HUMAN CARBONIC ANHYDRASE-C [J].
LILJAS, A ;
LOVGREN, S ;
BERGSTEN, PC ;
CARLBOM, U ;
PETEF, M ;
WAARA, I ;
STRANDBERG, B ;
FRIDBORG, K ;
JARUP, L ;
KANNAN, KK .
NATURE-NEW BIOLOGY, 1972, 235 (57) :131-+
[48]   Chimeric double-stranded RNA-specific adenosine deaminase ADAR1 proteins reveal functional selectivity of double-stranded RNA-binding domains from ADAR1 and protein kinase PKR [J].
Liu, Y ;
Lei, M ;
Samuel, CE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (23) :12541-12546
[49]   Functionally distinct double-stranded RNA-binding domains associated with alternative splice site variants of the interferon-inducible double-stranded RNA-specific adenosine deaminase [J].
Liu, Y ;
George, CX ;
Patterson, JB ;
Samuel, CE .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (07) :4419-4428
[50]   Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA [J].
Losey, HC ;
Ruthenburg, AJ ;
Verdine, GL .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2006, 13 (02) :153-159