Role of the hydrophobic and hydrophilic sites in the dynamic crossover of the protein-hydration water

被引:25
|
作者
Kohler, Mateus Henrique [1 ]
Barbosa, Rafael C. [1 ]
da Silva, Leandro B. [2 ]
Barbosa, Marcia C. [1 ]
机构
[1] Univ Fed Rio Grande do Sul, Inst Fis, Caixa Postal 15051, BR-91501970 Porto Alegre, RS, Brazil
[2] Univ Fed Santa Maria, Dept Fis, Ave Roraima 1000, Santa Maria, RS, Brazil
关键词
Hydration water; Diffusion coefficient; Hydrophobicity; Hydrophilicity; MOLECULAR-DYNAMICS; NEUTRON-SCATTERING; MOTIONS; TRANSITIONS; ANOMALIES; DIFFUSION; SOLVENT; EQUATIONS; PEPTIDES; CRYSTALS;
D O I
10.1016/j.physa.2016.11.127
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Molecular dynamics simulations were performed to study the water structure and dynamics in the hydration shell of the globular TS-Kappa protein. The results show that for a wide range of temperatures the diffusion coefficient of water near the protein surface is lower than in bulk. A crossover in the diffusion behavior of hydration water is observed at different temperatures for hydrophilic and hydrophobic vicinities. We have found a correlation between the crossover in the hydrophilic case and the protein dynamical transition. An explanation in terms of the competition between water-water water-protein H-bond formation is provided based on H-bond network analysis. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:733 / 739
页数:7
相关论文
共 50 条
  • [31] Dynamic entity formed by protein and its hydration water
    Ye, Yongfeng
    Chen, Xiaoxia
    Huang, Juan
    Zheng, Lirong
    Tang, Qingxue
    Long, Liuliu
    Yamada, Takeshi
    Tyagi, Madhusudan
    Sakai, Victoria Garcia
    O'Neill, Hugh
    Zhang, Qiu
    de Souza, Nicolas R.
    Xiao, Xiang
    Zhao, Weishu
    Hong, Liang
    Liu, Zhuo
    PHYSICAL REVIEW RESEARCH, 2024, 6 (03):
  • [32] ROLE OF HYDROPHOBIC AND HYDROPHILIC FORCES IN PEPTIDE-PROTEIN INTERACTION - NEW ADVANCES
    CSERHATI, T
    SZOGYI, M
    PEPTIDES, 1995, 16 (01) : 165 - 173
  • [33] Water and polymer dynamics in a model polysaccharide hydrogel: the role of hydrophobic/hydrophilic balance
    Rossi, B.
    Venuti, V.
    D'Amico, F.
    Gessini, A.
    Castiglione, F.
    Mele, A.
    Punta, C.
    Melone, L.
    Crupi, V.
    Majolino, D.
    Trotta, F.
    Masciovecchio, C.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2015, 17 (02) : 963 - 971
  • [34] Role of Hydrophobic Hydration in Protein Stability: A 3D Water-Explicit Protein Model Exhibiting Cold and Heat Denaturation
    Matysiak, Silvina
    Debenedetti, Pablo G.
    Rossky, Peter J.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (28): : 8095 - 8104
  • [35] Dynamics of Water in a Hydrophobic Elastomer and Its Beneficial Role in Preserving Skin Hydration
    Dasgupta, Debarshi
    Miao, Mingbo
    Dalavoy, Tulika
    Kandikkal, Ashitha
    Acharya, Shruthi
    Farhan, Reema
    Lewis, Kenrick M.
    Falk, Benjamin
    Mukherjee, Koushik
    Nair, Sreejit
    Sarkar, Alok
    ACS APPLIED POLYMER MATERIALS, 2025, 7 (05): : 2841 - 2852
  • [36] Role of hydration water in the onset of protein structural dynamics
    Schiro, Giorgio
    Weik, Martin
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2019, 31 (46)
  • [37] Structured water about Rb plus (AQ) and Kr(AQ): A direct comparison of hydrophilic vs hydrophobic hydration
    Rempe, S
    Pratt, L
    BIOPHYSICAL JOURNAL, 2002, 82 (01) : 360A - 360A
  • [38] Atomistic details of protein dynamics and the role of hydration water
    Khodadadi, Sheila
    Sokolov, Alexei P.
    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2017, 1861 (01): : 3546 - 3552
  • [39] Properties of hydration water and its role in protein dynamics
    Swenson, Jan
    Jansson, Helen
    Hedstrom, Johan
    Bergman, Rikard
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19 (20)
  • [40] Exploring the role of water in molecular recognition: predicting protein ligandability using a combinatorial search of surface hydration sites
    Vukovic, Sinisa
    Brennan, Paul E.
    Huggins, David J.
    JOURNAL OF PHYSICS-CONDENSED MATTER, 2016, 28 (34)