Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4

被引:156
作者
Xu, Jianfeng [2 ,3 ,4 ,5 ]
Mo, Zengnan [6 ,7 ]
Ye, Dingwei [8 ,9 ]
Wang, Meilin [10 ,11 ]
Liu, Fang [2 ,3 ]
Jin, Guangfu [5 ,11 ,12 ,13 ]
Xu, Chuanliang [1 ]
Wang, Xiang [2 ]
Shao, Qiang [14 ]
Chen, Zhiwen [15 ]
Tao, Zhihua [16 ]
Qi, Jun [17 ]
Zhou, Fangjian [18 ,19 ]
Wang, Zhong [5 ,20 ]
Fu, Yaowen [21 ]
He, Dalin [22 ]
Wei, Qiang [23 ]
Guo, Jianming [24 ]
Wu, Denglong [25 ]
Gao, Xin [26 ]
Yuan, Jianlin [27 ]
Wang, Gongxian [28 ]
Xu, Yong [29 ]
Wang, Guozeng [30 ]
Yao, Haijun [20 ]
Dong, Pei [18 ,19 ]
Jiao, Yang [17 ]
Shen, Mo [31 ]
Yang, Jin [32 ]
Jun Ou-Yang [33 ]
Jiang, Haowen [2 ]
Zhu, Yao [8 ,9 ]
Ren, Shancheng [1 ]
Zhang, Zhengdong [10 ,11 ]
Yin, Changjun [34 ]
Gao, Xu [1 ]
Dai, Bo [8 ,9 ]
Hu, Zhibin [11 ,12 ,13 ]
Yang, Yajun [35 ,36 ,37 ]
Wu, Qijun [38 ]
Chen, Hongyan [3 ,4 ]
Peng, Peng [39 ]
Zheng, Ying [39 ]
Zheng, Xiaodong [40 ,41 ,42 ]
Xiang, Yongbing [43 ]
Long, Jirong [44 ]
Gong, Jian [2 ]
Na, Rong [2 ]
Lin, Xiaoling [2 ,3 ]
Yu, Hongjie [3 ,4 ]
机构
[1] Second Mil Med Univ, Shanghai Changhai Hosp, Dept Urol, Shanghai, Peoples R China
[2] Fudan Univ, Huashan Hosp, Fudan Inst Urol, Shanghai 200433, Peoples R China
[3] Fudan Univ, Sch Life Sci, Fudan Ctr Genet Epidemiol, Shanghai 200433, Peoples R China
[4] Fudan Univ, Sch Life Sci, State Key Lab Genet Engn, Shanghai 200433, Peoples R China
[5] Wake Forest Univ, Bowman Gray Sch Med, Ctr Canc Genom, Winston Salem, NC USA
[6] Guangxi Med Univ, Ctr Genom & Personalized Med, Nanning, Peoples R China
[7] Guangxi Med Univ, Affiliated Hosp 1, Dept Urol & Nephrol, Nanning, Peoples R China
[8] Fudan Univ, Shanghai Med Coll, Shanghai Canc Ctr, Dept Urol, Shanghai 200433, Peoples R China
[9] Fudan Univ, Shanghai Med Coll, Dept Oncol, Shanghai 200433, Peoples R China
[10] Nanjing Med Univ, Sch Publ Hlth, Minist Educ, Dept Mol & Genet Toxicol,Key Lab Modern Toxicol, Nanjing, Jiangsu, Peoples R China
[11] Nanjing Med Univ, State Key Lab Reprod Med, Nanjing, Jiangsu, Peoples R China
[12] Nanjing Med Univ, Sch Publ Hlth, Dept Epidemiol & Biostat, Nanjing, Jiangsu, Peoples R China
[13] Nanjing Med Univ, Ctr Canc, Jiangsu Key Lab Canc Biomarkers Prevent & Treatme, Nanjing, Jiangsu, Peoples R China
[14] Suzhou Municipal Hosp, Dept Urol, Suzhou, Peoples R China
[15] Third Mil Med Univ, Southwest Hosp, Urol Inst Peoples Liberat Army PLA, Chongqing, Peoples R China
[16] Zhejiang Univ, Sch Med, Affiliated Hosp 2, Dept Lab Med, Hangzhou 310003, Zhejiang, Peoples R China
[17] Shanghai Jiao Tong Univ, Sch Med, Xinhua Hosp, Dept Urol, Shanghai 200030, Peoples R China
[18] State Key Lab Oncol So China, Guangzhou, Guangdong, Peoples R China
[19] Sun Yat Sen Univ, Ctr Canc, Dept Urol, Guangzhou 510275, Guangdong, Peoples R China
[20] Shanghai Jiao Tong Univ, Sch Med, Peoples Hosp 9, Dept Urol, Shanghai 200030, Peoples R China
[21] Jilin Univ, Hosp 1, Dept Urol, Changchun 130023, Peoples R China
[22] Xi An Jiao Tong Univ, Affiliated Hosp 1, Coll Med, Dept Urol, Xian 710049, Peoples R China
[23] Sichuan Univ, W China Hosp, Dept Urol, Chengdu 610064, Peoples R China
[24] Fudan Univ, Zhongshan Hosp, Dept Urol, Shanghai 200433, Peoples R China
[25] Tongji Univ, Tongji Hosp, Dept Urol, Shanghai 200092, Peoples R China
[26] Sun Yat Sen Univ, Affiliated Hosp 3, Dept Urol, Guangzhou 510275, Guangdong, Peoples R China
[27] Fourth Mil Med Univ, Xijing Hosp, Dept Urol, Xian 710032, Peoples R China
[28] Nanchang Univ, Affiliated Hosp 1, Dept Urol, Nanchang, Jiangxi, Peoples R China
[29] TianJin Med Univ, TianJin Inst Urol, Hosp 2, Dept Urol, Tianjin, Peoples R China
[30] Pudong Gongli Hosp, Dept Urol, Shanghai, Peoples R China
[31] Wenzhou Med Coll, Affiliated Hosp 1, Dept Lab Med, Wenzhou, Peoples R China
[32] Third Mil Med Univ, Dept Cell Biol, Chongqing, Peoples R China
[33] Suzhou Univ, Peoples Hosp 1, Dept Urol, Suzhou 215006, Peoples R China
[34] Nanjing Med Univ, Affiliated Hosp 1, Dept Urol, Nanjing, Jiangsu, Peoples R China
[35] Fudan Univ, Minist Educ, Key Lab Contemporary Anthropol, Sch Life Sci, Shanghai 200433, Peoples R China
[36] Fudan Univ, Inst Biomed Sci, Shanghai 200433, Peoples R China
[37] Fudan Taizhou Inst Hlth Sci, Taizhou, Peoples R China
[38] Shanghai Jiao Tong Univ, Shanghai Canc Inst, Renji Hosp, State Key Lab Oncogene & Related Genes,Sch Med, Shanghai 200030, Peoples R China
[39] Shanghai Municipal Ctr Dis Control & Prevent, Dept Canc Prevent & Control, Shanghai, Peoples R China
[40] Anhui Med Univ, Hosp 1, Inst Dermatol, Hefei, Peoples R China
[41] Anhui Med Univ, Hosp 1, Dept Dermatol, Hefei, Peoples R China
[42] Minist Natl Sci & Technol, State Key Lab Incubat Base Dermatol, Hefei, Peoples R China
[43] Shanghai Canc Inst, Dept Epidemiol, Shanghai, Peoples R China
[44] Vanderbilt Univ, Sch Med, Vanderbilt Ingram Canc Ctr, Dept Med,Vanderbilt Epidemiol Ctr,Div Epidemiol, Nashville, TN 37212 USA
[45] Canc Prevent Inst Calif, Fremont, CA USA
[46] Univ Calif Los Angeles, David Geffen Sch Med, Dept Pathol & Lab Med, Los Angeles, CA 90095 USA
[47] Karolinska Inst, Dept Med Epidemiol & Biostat, Stockholm, Sweden
[48] Shanghai Jiao Tong Univ, Sch Publ Hlth, Shanghai 200030, Peoples R China
基金
美国国家卫生研究院; 中国国家自然科学基金;
关键词
SUSCEPTIBILITY LOCUS; GENE-CLUSTER; CLASS-I; VARIANTS; RECEPTORS;
D O I
10.1038/ng.2424
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Prostate cancer risk-associated variants have been reported in populations of European descent, African-Americans and Japanese using genome-wide association studies (GWAS). To systematically investigate prostate cancer risk-associated variants in Chinese men, we performed the first GWAS in Han Chinese. In addition to confirming several associations reported in other ancestry groups, this study identified two new risk-associated loci for prostate cancer on chromosomes 9q31.2 (rs817826, P = 5.45 x 10(-14)) and 19q13.4 (rs103294, P = 5.34 x 10(-16)) in 4,484 prostate cancer cases and 8,934 controls. The rs103294 marker at 19q13.4 is in strong linkage equilibrium with a 6.7-kb germline deletion that removes the first six of seven exons in LILRA3, a gene regulating inflammatory response, and was significantly associated with the mRNA expression of LILRA3 in T cells (P < 1 x 10(-4)). These findings may advance the understanding of genetic susceptibility to prostate cancer.
引用
收藏
页码:1231 / 1235
页数:5
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