Trapping DNA near a Solid-State Nanopore

被引:43
作者
Vlassarev, Dimitar M. [1 ]
Golovchenko, Jene A. [1 ,2 ]
机构
[1] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
[2] Harvard Univ, Sch Engn & Appl Sci, Cambridge, MA 02138 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
MOLECULES; DISCRIMINATION; TRANSLOCATION; MEMBRANE; GRAPHENE; GLASS;
D O I
10.1016/j.bpj.2012.06.008
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
We demonstrate that voltage-biased solid-state nanopores can transiently localize DNA in an electrolyte solution. A double-stranded DNA (dsDNA) molecule is trapped when the electric field near the nanopore attracts and immobilizes a non-end segment of the molecule across the nanopore orifice without inducing a folded molecule translocation. In this demonstration of the phenomenon, the ionic current through the nanopore decreases when the dsDNA molecule is trapped by the nanopore. By contrast, a translocating dsDNA molecule under the same conditions causes an ionic current increase. We also present finite-element modeling results that predict this behavior for the conditions of the experiment.
引用
收藏
页码:352 / 356
页数:5
相关论文
共 14 条
[1]   Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules [J].
Akeson, M ;
Branton, D ;
Kasianowicz, JJ ;
Brandin, E ;
Deamer, DW .
BIOPHYSICAL JOURNAL, 1999, 77 (06) :3227-3233
[2]   The charge of glass and silica surfaces [J].
Behrens, SH ;
Grier, DG .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (14) :6716-6721
[3]   TRANSFERENCE NUMBERS FOR CONCENTRATED AQUEOUS SODIUM CHLORIDE SOLUTIONS, AND THE IONIC CONDUCTANCES FOR POTASSIUM AND SODIUM CHLORIDES [J].
CURRIE, DJ ;
GORDON, AR .
JOURNAL OF PHYSICAL CHEMISTRY, 1960, 64 (11) :1751-1753
[4]   Graphene as a subnanometre trans-electrode membrane [J].
Garaj, S. ;
Hubbard, W. ;
Reina, A. ;
Kong, J. ;
Branton, D. ;
Golovchenko, J. A. .
NATURE, 2010, 467 (7312) :190-U73
[5]   ION-SENSING DEVICES WITH SILICON-NITRIDE AND BOROSILICATE GLASS INSULATORS [J].
HARAME, DL ;
BOUSSE, LJ ;
SHOTT, JD ;
MEINDL, JD .
IEEE TRANSACTIONS ON ELECTRON DEVICES, 1987, 34 (08) :1700-1707
[6]   Probing Surface Charge Fluctuations with Solid-State Nanopores [J].
Hoogerheide, David P. ;
Garaj, Slaven ;
Golovchenko, Jene A. .
PHYSICAL REVIEW LETTERS, 2009, 102 (25)
[7]   Characterization of individual polynucleotide molecules using a membrane channel [J].
Kasianowicz, JJ ;
Brandin, E ;
Branton, D ;
Deamer, DW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (24) :13770-13773
[8]   Ion-beam sculpting at nanometre length scales [J].
Li, J ;
Stein, D ;
McMullan, C ;
Branton, D ;
Aziz, MJ ;
Golovchenko, JA .
NATURE, 2001, 412 (6843) :166-169
[9]   DNA molecules and configurations in a solid-state nanopore microscope [J].
Li, JL ;
Gershow, M ;
Stein, D ;
Brandin, E ;
Golovchenko, JA .
NATURE MATERIALS, 2003, 2 (09) :611-615
[10]  
Merchant CA, 2010, NANO LETT, V10, P2915, DOI 10.1021/nl101046t