Echinicola soli sp. nov., isolated from alkaline saline soil

被引:12
作者
Xing, Ya-Ting [1 ,2 ]
Xu, Lian [1 ,2 ]
Wang, Hai-Tao [1 ,2 ]
Huang, Xiao-Xian [1 ,2 ]
Wang, Shuai [1 ,2 ]
Sun, Ji-Quan [1 ,2 ]
机构
[1] Inner Mongolia Univ, Sch Ecol & Environm, Inner Mongolia Key Lab Environm Pollut Prevent &, Hohhot 010021, Peoples R China
[2] Inner Mongolia Univ, Sch Ecol & Environm, Minist Educ, Key Lab Ecol & Resource Use Mongolian Plateau, Hohhot 010021, Peoples R China
关键词
Bacteroidetes; saline soil; Echinicola soli; taxonomy; GENOME SEQUENCE; BACTERIUM;
D O I
10.1099/ijsem.0.004262
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Strains of Echinicola, thought to play vital roles in the environment for their high enzyme production capacity during decomposi-tion of polysaccharides, are ubiquitous in hypersaline environments. A Gram-negative, non-spore forming, gliding, aerobic bacterial strain, designated LN3S3(T), was isolated from alkaline saline soil sampled in Tumd Right Banner, Inner Mongolia, northern PR China. Strain LN3S3(T) grew at 10-40 degrees C (optimum, 30 degrees C), pH 5.0-9.0 (optimum, pH 8.0) and with 0-12.5 % NaCl (optimum, 2.0 %). A phylogenetic tree based on the 16S rRNA gene sequences showed that strain LN3S3(T) clustered with Echinicola rosea JL3085(T) and Echinicola strongylocentroti MEBiC08714(T), sharing 97.0, 96.7 and <96.50 % of 16S rRNA gene sequence similari-ties to E. rosea JL3085(T), E. strongylocentroti MEBiC08714(T) and all other type strains. MK-7 was the major respiratory quinone, while phosphatidylethanolamine, two unidentified phospholipids, an unidentified aminophospholipid, an unidentified lipid and two unidentified aminolipids were the major polar lipids. Its major cellular fatty acids were iso-C-15:0, anteiso-C-15:0 and summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c). The genome consisted of a circular 5550304 bp long chromosome with a DNA G+C content of 44.0 mol%. The average nucleotide identity (ANI), average amino acid identity (AAI) and digital DNA-DNA hybridization (dDDH) values of strain LN3S3(T) to E. rosea JL3085(T) and E. strongylocentroti MEBiC08714(T) were 82.5 and 81.5 %, 87.5 and 86.0 %, and 39.1 and 35.1 %, respectively. Based on physiological, genotypic and phylogenetic analyses, strain LN3S3(T) could be discrimi-nated from its phylogenetic relatives. Echinicola soli sp. nov. is therefore proposed with strain LN3S3(T) (=CGMCC 1.17081(T)=KCTC 72458(T)) as the type strain.
引用
收藏
页码:4139 / 4144
页数:6
相关论文
共 31 条
  • [1] Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
    Auch, Alexander F.
    von Jan, Mathias
    Klenk, Hans-Peter
    Goeker, Markus
    [J]. STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01): : 117 - 134
  • [2] Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002516, 10.1099/ijsem.0.002532]
  • [3] Dong X, 2001, DETERMINATIVE MANUAL
  • [4] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
  • [5] FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
  • [6] Reappraisal of the antimicrobial susceptibilities of Chryseobacterium and Flavobacterium species and methods for reliable susceptibility testing
    Fraser, SL
    Jorgensen, JH
    [J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 1997, 41 (12) : 2738 - 2741
  • [7] Spider phylogenomics: untangling the Spider Tree of Life
    Garrison, Nicole L.
    Rodriguez, Juanita
    Agnarsson, Ingi
    Coddington, Jonathan A.
    Griswold, Charles E.
    Hamilton, Christopher A.
    Hedin, Marshal
    Kocot, Kevin M.
    Ledford, Joel M.
    Bond, Jason E.
    [J]. PEERJ, 2016, 4
  • [8] Prodigal: prokaryotic gene recognition and translation initiation site identification
    Hyatt, Doug
    Chen, Gwo-Liang
    LoCascio, Philip F.
    Land, Miriam L.
    Larimer, Frank W.
    Hauser, Loren J.
    [J]. BMC BIOINFORMATICS, 2010, 11
  • [9] Lysobacter pedocola sp nov., a novel species isolated from Korean soil
    Jang, Jun Hyeong
    Lee, Dongwook
    Seo, Taegun
    [J]. JOURNAL OF MICROBIOLOGY, 2018, 56 (06) : 387 - 392
  • [10] Echinicola strongylocentroti sp nov., isolated from a sea urchin Strongylocentrotus intermedius
    Jung, You-Jung
    Yang, Sung-Hyun
    Kwon, Kae Kyoung
    Bae, Seung Seob
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (03) : 670 - 675