Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR

被引:23
作者
Marion, Dominique [1 ]
Gauto, Diego F. [1 ]
Ayala, Isabel [1 ]
Giandoreggio-Barranco, Karine [1 ]
Schanda, Paul [1 ]
机构
[1] Univ Grenoble Alpes, CEA, CNRS, IBS, 71 Ave Martyrs, F-38000 Grenoble, France
基金
欧洲研究理事会;
关键词
Conformational exchange; NERRD; numerical spin simulations; crystalline protein dynamics; ubiquitin; ROTATING-FRAME RELAXATION; NUCLEAR-MAGNETIC-RESONANCE; CONFORMATIONAL DYNAMICS; TIME-SCALE; EXCHANGE PROCESSES; BACKBONE DYNAMICS; SLOW DYNAMICS; STATES; MOTIONS; SPECTROSCOPY;
D O I
10.1002/cphc.201800935
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Studying protein dynamics on microsecond-to-millisecond (mu s-ms) time scales can provide important insight into protein function. In magic-angle-spinning (MAS) NMR, mu s dynamics can be visualized by R1 rho rotating-frame relaxation dispersion experiments in different regimes of radio-frequency field strengths: at low RF field strength, isotropic-chemical-shift fluctuation leads to "Bloch-McConnell-type" relaxation dispersion, while when the RF field approaches rotary resonance conditions bond angle fluctuations manifest as increased R1 rho rate constants ("Near-Rotary-Resonance Relaxation Dispersion", NERRD). Here we explore the joint analysis of both regimes to gain comprehensive insight into motion in terms of geometric amplitudes, chemical-shift changes, populations and exchange kinetics. We use a numerical simulation procedure to illustrate these effects and the potential of extracting exchange parameters, and apply the methodology to the study of a previously described conformational exchange process in microcrystalline ubiquitin.
引用
收藏
页码:276 / 284
页数:9
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