Diffuse X-ray scattering from correlated motions in a protein crystal

被引:25
|
作者
Meisburger, Steve P. [1 ,2 ]
Case, David A. [3 ]
Ando, Nozomi [1 ,2 ]
机构
[1] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
[2] Cornell Univ, Dept Chem & Chem Biol, Ithaca, NY 14850 USA
[3] Rutgers State Univ, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA
关键词
MOLECULAR-DYNAMICS SIMULATIONS; HINGE-BENDING MODE; RIGID-BODY MOTION; SINGLE-PARAMETER; SOUND-VELOCITY; LYSOZYME; REFINEMENT; CRYSTALLOGRAPHY; MACROMOLECULES; DIFFRACTION;
D O I
10.1038/s41467-020-14933-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Protein dynamics are integral to biological function, yet few techniques are sensitive to collective atomic motions. A long-standing goal of X-ray crystallography has been to combine structural information from Bragg diffraction with dynamic information contained in the diffuse scattering background. However, the origin of macromolecular diffuse scattering has been poorly understood, limiting its applicability. We present a finely sampled diffuse scattering map from triclinic lysozyme with unprecedented accuracy and detail, clearly resolving both the inter- and intramolecular correlations. These correlations are studied theoretically using both all-atom molecular dynamics and simple vibrational models. Although lattice dynamics reproduce most of the diffuse pattern, protein internal dynamics, which include hinge-bending motions, are needed to explain the short-ranged correlations revealed by Patterson analysis. These insights lay the groundwork for animating crystal structures with biochemically relevant motions.
引用
收藏
页数:13
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