Neutron diffraction analysis of Pseudomonas aeruginosa peptidyl-tRNA hydrolase 1

被引:3
作者
McFeeters, Hana [1 ]
Vandavasi, Venu Gopal [2 ]
Weiss, Kevin L. [2 ]
Coates, Leighton [2 ]
McFeeters, Robert L. [1 ]
机构
[1] Univ Alabama, Dept Chem, 301 Sparkman Dr, Huntsville, AL 35899 USA
[2] Oak Ridge Natl Lab, Biol & Soft Matter Div, 1 Bethel Valley Rd, Oak Ridge, TN 37831 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2016年 / 72卷
关键词
peptidyl-tRNA hydrolase 1; neutron diffraction; perdeuteration; Pseudomonas aeruginosa; antibiotic resistance; ESCHERICHIA-COLI; MINIGENE EXPRESSION; X-RAY; INHIBITION; CRYSTALLIZATION; PNEUMONIA; GROWTH;
D O I
10.1107/S2053230X16001813
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Perdeuterated peptidyl-tRNA hydrolase 1 from Pseudomonas aeruginosa was crystallized for structural analysis using neutron diffraction. Crystals of perdeuterated protein were grown to 0.15 mm(3) in size using batch crystallization in 22.5% polyethylene glycol 4000, 100 mM Tris pH 7.5, 10% (v/v) isopropyl alcohol with a 20-molar excess of trilysine as an additive. Neutron diffraction data were collected from a crystal at room temperature using the MaNDi single-crystal diffractometer at Oak Ridge National Laboratory.
引用
收藏
页码:220 / 223
页数:4
相关论文
共 26 条
  • [1] Joint X-ray and neutron refinement with phenix.refine
    Afonine, Pavel V.
    Mustyakimov, Marat
    Grosse-Kunstleve, Ralf W.
    Moriarty, Nigel W.
    Langan, Paul
    Adams, Paul D.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 : 1153 - 1163
  • [2] Mantid-Data analysis and visualization package for neutron scattering and μ SR experiments
    Arnold, O.
    Bilheux, J. C.
    Borreguero, J. M.
    Buts, A.
    Campbell, S. I.
    Chapon, L.
    Doucet, M.
    Draper, N.
    Leal, R. Ferraz
    Gigg, M. A.
    Lynch, V. E.
    Markvardsen, A.
    Mikkelson, D. J.
    Mikkelson, R. L.
    Miller, R.
    Palmen, K.
    Parker, P.
    Passos, G.
    Perring, T. G.
    Peterson, P. F.
    Ren, S.
    Reuter, M. A.
    Savici, A. T.
    Taylor, J. W.
    Taylor, R. J.
    Tolchenoy, R.
    Zhou, W.
    Zikoysky, J.
    [J]. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 2014, 764 : 156 - 166
  • [3] LAUEGEN version 6.0 and INTLDM
    Campbell, JW
    Hao, Q
    Harding, MM
    Nguti, ND
    Wilkinson, C
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1998, 31 : 496 - 502
  • [4] The macromolecular neutron diffractometer (MaNDi) at the Spallation Neutron Source, Oak Ridge: enhanced optics design, high-resolution neutron detectors and simulated diffraction
    Coates, L.
    Stoica, A. D.
    Hoffmann, C.
    Richards, J.
    Cooper, R.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2010, 43 : 570 - 577
  • [5] The Macromolecular Neutron Diffractometer MaNDi at the Spallation Neutron Source
    Coates, Leighton
    Cuneo, Matthew J.
    Frost, Matthew J.
    He, Junhong
    Weiss, Kevin L.
    Tomanicek, Stephen J.
    McFeeters, Hana
    Vandavasi, Venu Gopal
    Langan, Paul
    Iverson, Erik B.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2015, 48 : 1302 - 1306
  • [6] Ventilator associated pneumonia: perspectives on the burden of illness
    Cook, D
    [J]. INTENSIVE CARE MEDICINE, 2000, 26 (Suppl 1) : S31 - S37
  • [7] The rate of Peptidyl-tRNA dissociation from the ribosome during minigene expression depends on the nature of the last decoding interaction
    Cruz-Vera, LR
    Hernández-Ramón, E
    Pérez-Zamorano, B
    Guarneros, G
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (28) : 26065 - 26070
  • [8] Molecular basis for the temperature sensitivity of Escherichia coli pth(Ts)
    Cruz-Vera, LR
    Toledo, I
    Hernández-Sánchez, J
    Guarneros, G
    [J]. JOURNAL OF BACTERIOLOGY, 2000, 182 (06) : 1523 - 1528
  • [9] ROLE OF THE 1-72 BASE-PAIR IN TRANSFER-RNAS FOR THE ACTIVITY OF ESCHERICHIA-COLI PEPTIDYL-TRANSFER RNA HYDROLASE
    DUTKA, S
    MEINNEL, T
    LAZENNEC, C
    MECHULAM, Y
    BLANQUET, S
    [J]. NUCLEIC ACIDS RESEARCH, 1993, 21 (17) : 4025 - 4030
  • [10] Pneumonia treated in the internal medicine department: focus on healthcare-associated pneumonia
    Giannella, M.
    Pinilla, B.
    Capdevila, J. A.
    Martinez Alarcon, J.
    Munoz, P.
    Lopez Alvarez, J.
    Bouza, E.
    [J]. CLINICAL MICROBIOLOGY AND INFECTION, 2012, 18 (08) : 786 - 794