Identification of potential modulator ofAnopheles gambiaeodorant binding protein 1 by hierarchical virtual screening and molecular dynamics

被引:5
作者
do Bomfim, Mayra Ramos [1 ]
Carneiro Araujo, Janay Stefany [2 ]
da Cruz Macedo, Williams Jorge [3 ]
Rodrigues dos Santos, Cleydson Breno [4 ]
Andrade Leite, Franco Henrique [1 ,2 ,5 ]
机构
[1] Univ Estadual Feira de Santana, Lab Modelagem Mol, BR-44036900 Feira De Santana, BA, Brazil
[2] Univ Estadual Feira de Santana, Programa Posgrad Biotecnol, Feira De Santana, BA, Brazil
[3] Univ Fed Rural Amazonia, Lab Modelagem Mol & Simulacao Sistemas, Capanema, Brazil
[4] Univ Fed Amapa, Programa Posgrad Biodiversidade & Biotecnol Rede, Macapa, Brazil
[5] Univ Estadual Feira de Santana, Programa Posgrad Ciencias Farmaceut, Feira De Santana, BA, Brazil
关键词
AgOBP1; 2D-chemical similarity; Malaria; docking; molecular dynamics; DRUG DISCOVERY; ANOPHELES; PERFORMANCE; VALIDATION; SELECTION; DESIGN; 2D;
D O I
10.1080/07391102.2020.1796807
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Malaria is a protozoan infection transmitted by the bite of the infected female mosquito belonging to the genusAnopheles spp., which causes more than 445 million annual deaths worldwide. Available drugs have serious adverse effects (e.g.blurred vision, hypotension and headache) and species-dependent efficacy. An alternative to overcome these problems involve the use of molecules with affinity to theAnopheles gambiaemosquito odor receptors, minimizing the reinfection process as well as reducing the problems related to pharmacological therapy. The vector control can interrupt the epidemiological cycle and, therefore, control the malaria incidence. In the olfactory pathway, odorant binding protein 1 acts on the first level of odor recognition on malarial vector and thus can be used to modulate mosquito behavior and development of new attracts or repellents. Thus, this study applied ligand-based (2D-chemical similarity) and structure-based (docking and molecular dynamics) computational approaches to prioritize potential olfactory modulators on natural products catalogs at ZINC(15)database (n = 98,379). Hierarchical virtual screening prioritized a potential olfactory modulator (Z8217) againstAnopheles gambiaeodorant binding protein 1 (AgOBP1). Next, it was submitted to molecular dynamics routine to identify structural requirements and the interactions profile required for binding-site affinity. This promising natural compound can interact like experimental ligand and will be used in repellency assay to confirm its sensorial behavior. Communicated by Ramaswamy H. Sarma
引用
收藏
页码:6031 / 6043
页数:13
相关论文
共 66 条
  • [1] Affonso RD, 2013, J BRAZIL CHEM SOC, V24, P473, DOI [10.5935/0103-5053.20130059, 10.1590/S0103-50532013000300015]
  • [2] New approaches in antimalarial drug discovery and development - A Review
    Aguiar, Anna Caroline C.
    da Rocha, Eliana M. M.
    de Souza, Nicolli B.
    Franca, Tanos C. C.
    Krettli, Antoniana U.
    [J]. MEMORIAS DO INSTITUTO OSWALDO CRUZ, 2012, 107 (07): : 831 - 845
  • [3] [Anonymous], 2010, GUIA PRAT TRAT MAL B
  • [4] [Anonymous], 2017, Leishmaniasis
  • [5] [Anonymous], 2015, THESIS
  • [6] Arend D., 2010, Minitab 17 Statistical Software
  • [7] When is Chemical Similarity Significant? The Statistical Distribution of Chemical Similarity Scores and Its Extreme Values
    Baldi, Pierre
    Nasr, Ramzi
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2010, 50 (07) : 1205 - 1222
  • [8] THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS
    BERENDSEN, HJC
    GRIGERA, JR
    STRAATSMA, TP
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) : 6269 - 6271
  • [9] The Anopheles gambiae Odorant Binding Protein 1 (AgamOBP1) Mediates Indole Recognition in the Antennae of Female Mosquitoes
    Biessmann, Harald
    Andronopoulou, Evi
    Biessmann, Max R.
    Douris, Vassilis
    Dimitratos, Spiros D.
    Eliopoulos, Elias
    Guerin, Patrick M.
    Iatrou, Kostas
    Justice, Robin W.
    Kroeber, Thomas
    Marinotti, Osvaldo
    Tsitoura, Panagiota
    Woods, Daniel F.
    Walter, Marika F.
    [J]. PLOS ONE, 2010, 5 (03):
  • [10] Assessing the Performance of 3D Pharmacophore Models in Virtual Screening: How Good are They?
    Braga, Rodolpho C.
    Andrade, Carolina H.
    [J]. CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2013, 13 (09) : 1127 - 1138