Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins

被引:161
作者
Srinivasan, Suhas [1 ]
Cui, Hongzhu [2 ]
Gao, Ziyang [2 ]
Liu, Ming [2 ]
Lu, Senbao [2 ]
Mkandawire, Winnie [2 ]
Narykov, Oleksandr [3 ]
Sun, Mo [2 ]
Korkin, Dmitry [1 ,2 ,3 ]
机构
[1] Worcester Polytech Inst, Data Sci Program, Worcester, MA 01609 USA
[2] Worcester Polytech Inst, Bioinformat & Computat Biol Program, Worcester, MA 01609 USA
[3] Worcester Polytech Inst, Dept Comp Sci, Worcester, MA 01609 USA
来源
VIRUSES-BASEL | 2020年 / 12卷 / 04期
基金
美国国家科学基金会;
关键词
2019 novel coronavirus; SARS-CoV-2; 2019-nCoV; COVID-19; structural genomics; interactome; protein-protein interactions; RESPIRATORY SYNDROME CORONAVIRUS; RECEPTOR-BINDING DOMAIN; MERS-COV; NEUTRALIZING ANTIBODY; GLOBAL HEALTH; SARS; DISCOVERY; PREDICTION; VACCINE;
D O I
10.3390/v12040360
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
During its first two and a half months, the recently emerged 2019 novel coronavirus, SARS-CoV-2, has already infected over one-hundred thousand people worldwide and has taken more than four thousand lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge, we leveraged data about the related coronaviruses that is readily available in public databases and integrated these data into a single computational pipeline. As a result, we provide comprehensive structural genomics and interactomics roadmaps of SARS-CoV-2 and use this information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community.
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页数:17
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