Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning

被引:58
作者
Baranov, Pavel V. [1 ]
Atkins, John F. [1 ,2 ]
Yordanova, Martina M. [1 ]
机构
[1] Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland
[2] Univ Utah, Dept Human Genet, Salt Lake City, UT 84112 USA
基金
英国惠康基金;
关键词
RIBOSOMAL FRAMESHIFT SIGNALS; ORNITHINE-DECARBOXYLASE ANTIZYME; MAMMALIAN THIOREDOXIN REDUCTASE; OPEN READING FRAMES; RNA G-QUADRUPLEX; MESSENGER-RNA; STOP-CODON; SACCHAROMYCES-CEREVISIAE; ESCHERICHIA-COLI; UGA CODONS;
D O I
10.1038/nrg3963
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The non-universality of the genetic code is now widely appreciated. Codes differ between organisms, and certain genes are known to alter the decoding rules in a site-specific manner. Recently discovered examples of decoding plasticity are particularly spectacular. These examples include organisms and organelles with disruptions of triplet continuity during the translation of many genes, viruses that alter the entire genetic code of their hosts and organisms that adjust their genetic code in response to changing environments. In this Review, we outline various modes of alternative genetic decoding and expand existing terminology to accommodate recently discovered manifestations of this seemingly sophisticated phenomenon.
引用
收藏
页码:517 / 529
页数:13
相关论文
共 187 条
[41]   EXPRESSION OF PEPTIDE-CHAIN RELEASE FACTOR-II REQUIRES HIGH-EFFICIENCY FRAMESHIFT [J].
CRAIGEN, WJ ;
CASKEY, CT .
NATURE, 1986, 322 (6076) :273-275
[42]   ORIGIN OF GENETIC CODE [J].
CRICK, FHC .
JOURNAL OF MOLECULAR BIOLOGY, 1968, 38 (03) :367-&
[43]   CONTROL OF GENE EXPRESSION BY TRANSLATIONAL RECODING [J].
Dinman, Jonathan D. .
ADVANCES IN PROTEIN CHEMISTRY AND STRUCTURAL BIOLOGY, VOL 86: FIDELITY AND QUALITY CONTROL IN GENE EXPRESSION, 2012, 86 :129-149
[44]   The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences [J].
Donnelly, MLL ;
Hughes, LE ;
Luke, G ;
Mendoza, H ;
ten Dam, E ;
Gani, D ;
Ryan, MD .
JOURNAL OF GENERAL VIROLOGY, 2001, 82 :1027-1041
[45]   Analysis of the aphthovirus 2A/2B polyprotein 'cleavage' mechanism indicates not a proteolytic reaction, but a novel translational effect: a putative ribosomal 'skip' [J].
Donnelly, MLL ;
Luke, G ;
Mehrotra, A ;
Li, XJ ;
Hughes, LE ;
Gani, D ;
Ryan, MD .
JOURNAL OF GENERAL VIROLOGY, 2001, 82 :1013-1025
[46]   Translational control in positive strand RNA plant viruses [J].
Dreher, TW ;
Miller, WA .
VIROLOGY, 2006, 344 (01) :185-197
[47]   Mechanism and regulation of selenoprotein synthesis [J].
Driscoll, DM ;
Copeland, PR .
ANNUAL REVIEW OF NUTRITION, 2003, 23 :17-40
[48]   Evolution and Diversification of the Organellar Release Factor Family [J].
Duarte, Isabel ;
Nabuurs, Sander B. ;
Magno, Ramiro ;
Huynen, Martijn .
MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (11) :3497-3512
[49]   Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster [J].
Dunn, Joshua G. ;
Foo, Catherine K. ;
Belletier, Nicolette G. ;
Gavis, Elizabeth R. ;
Weissman, Jonathan S. .
ELIFE, 2013, 2
[50]   Unusual-1 Ribosomal Frameshift Caused by Stable RNA G-Quadruplex in Open Reading Frame [J].
Endoh, Tamaki ;
Sugimoto, Naoki .
ANALYTICAL CHEMISTRY, 2013, 85 (23) :11435-11439