Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning

被引：57

作者：

Baranov, Pavel V. ^{[1
]}

Atkins, John F. ^{[1
,2
]}

Yordanova, Martina M. ^{[1
]}

机构：

[1] Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland

[2] Univ Utah, Dept Human Genet, Salt Lake City, UT 84112 USA

来源：

NATURE REVIEWS GENETICS | 2015年 / 16卷 / 09期

基金：

英国惠康基金;

关键词：

RIBOSOMAL FRAMESHIFT SIGNALS; ORNITHINE-DECARBOXYLASE ANTIZYME; MAMMALIAN THIOREDOXIN REDUCTASE; OPEN READING FRAMES; RNA G-QUADRUPLEX; MESSENGER-RNA; STOP-CODON; SACCHAROMYCES-CEREVISIAE; ESCHERICHIA-COLI; UGA CODONS;

D O I：

10.1038/nrg3963

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The non-universality of the genetic code is now widely appreciated. Codes differ between organisms, and certain genes are known to alter the decoding rules in a site-specific manner. Recently discovered examples of decoding plasticity are particularly spectacular. These examples include organisms and organelles with disruptions of triplet continuity during the translation of many genes, viruses that alter the entire genetic code of their hosts and organisms that adjust their genetic code in response to changing environments. In this Review, we outline various modes of alternative genetic decoding and expand existing terminology to accommodate recently discovered manifestations of this seemingly sophisticated phenomenon.

引用

页码：517 / 529

页数：13

共 187 条

[1] Ribosome Rescue and Translation Termination at Non-Standard Stop Codons by ICT1 in Mammalian Mitochondria [J].

Akabane, Shiori ;

Ueda, Takuya ;

Nierhaus, Knud H. ;

Takeuchi, Nono .

PLOS GENETICS, 2014, 10 (09)

[2] Natural expansion of the genetic code [J].

Ambrogelly, Alexandre ;

Palioura, Sotiria ;

Soll, Dieter .

NATURE CHEMICAL BIOLOGY, 2007, 3 (01) :29-35

[3] Identification of the nature of reading frame transitions observed in prokaryotic genomes [J].

Antonov, Ivan ;

Coakley, Arthur ;

Atkins, John F. ;

Baranov, Pavel V. ;

Borodovsky, Mark .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :6514-6530

[4] GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences [J].

Antonov, Ivan ;

Baranov, Pavel ;

Borodovsky, Mark .

NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D152-D156

[5] Isolation and characterization of a novel actin filament-binding protein from Saccharomyces cerevisiae [J].

Asakura, T ;

Sasaki, T ;

Nagano, F ;

Satoh, A ;

Obaishi, H ;

Nishioka, H ;

Imamura, H ;

Hotta, K ;

Tanaka, K ;

Nakanishi, H ;

Takai, Y .

ONCOGENE, 1998, 16 (01) :121-130

[6]

Atkins JF, 2010, NUCLEIC ACIDS MOL BI, V24, P1, DOI 10.1007/978-0-387-89382-2

[7] The Distinction Between Recoding and Codon Reassignment [J].

Atkins, John F. ;

Baranov, Pavel V. .

GENETICS, 2010, 185 (04)

[8] Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC) [J].

Baranov, Pavel V. ;

Wills, Norma M. ;

Barriscale, Kathy A. ;

Firth, Andrew E. ;

Jud, Molly C. ;

Letsou, Anthea ;

Manning, Gerard ;

Atkins, John F. .

RNA BIOLOGY, 2011, 8 (04) :637-647

[9] Recoding in bacteriophages and bacterial IS elements [J].

Baranov, PV ;

Fayet, O ;

Hendrix, RW ;

Atkins, JF .

TRENDS IN GENETICS, 2006, 22 (03) :174-181

[10] Programmed ribosomal frameshifting in decoding the SARS-CoV genome [J].

Baranov, PV ;

Henderson, CM ;

Anderson, CB ;

Gesteland, RF ;

Atkins, JF ;

Howard, MT .

VIROLOGY, 2005, 332 (02) :498-510

← 1 2 3 4 5 6 7 8 9 10 →