The progress of proteomic approaches in searching for cancer biomarkers

被引:14
作者
Kocevar, Nina [1 ]
Hudler, Petra [1 ]
Komel, Radovan [1 ]
机构
[1] Univ Ljubljana, Fac Med, Inst Biochem, Med Ctr Mol Biol, SI-1000 Ljubljana, Slovenia
关键词
SPECTROMETRY-BASED PROTEOMICS; MASS-SPECTROMETRY; BREAST-CANCER; 2-DIMENSIONAL ELECTROPHORESIS; QUANTITATIVE PROTEOMICS; MESSENGER-RNA; LC-MS/MS; CLINICAL PROTEOMICS; PROTEIN MICROARRAYS; PLASMA PROTEOME;
D O I
10.1016/j.nbt.2012.11.011
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Biomarkers are indicators of a specific biological state. Their detection in pathological conditions, such as cancer, is important for clinical disease management. One of their greatest values could be in early diagnosis and detection of neoplasms when the cancer is more manageable. Protein biomarkers are expected to be reliable predictors of pathological conditions, as they represent the endpoint of biological processes. The proteomic methodology has rapidly evolved in the past ten years, thus enabling discovery of a vast amount of potential biomarker candidates. However, the majority of novel candidates have not yet reached the integration into clinical environment. To do that, well-constructed large population validation studies are necessary as well as development of new algorithms for deciphering complex biological interactions and their involvement in pathological processes. This review focuses on advances in classical proteomic approaches and emerging high-throughput proteomic technologies for identifying cancer biomarkers.
引用
收藏
页码:319 / 326
页数:8
相关论文
共 107 条
  • [1] Identification of colorectal cancer metastasis markers by an angiogenesis-related cytokine-antibody array
    Abajo, Ana
    Bitarte, Nerea
    Zarate, Ruth
    Boni, Valentina
    Lopez, Ines
    Gonzalez-Huarriz, Marisol
    Rodriguez, Javier
    Bandres, Eva
    Garcia-Foncillas, Jesus
    [J]. WORLD JOURNAL OF GASTROENTEROLOGY, 2012, 18 (07) : 637 - 645
  • [2] Mass spectrometry-based proteomics: existing capabilities and future directions
    Angel, Thomas E.
    Aryal, Uma K.
    Hengel, Shawna M.
    Baker, Erin S.
    Kelly, Ryan T.
    Robinson, Errol W.
    Smith, Richard D.
    [J]. CHEMICAL SOCIETY REVIEWS, 2012, 41 (10) : 3912 - 3928
  • [3] Approaching Clinical Proteomics: Current State and Future Fields of Application in Cellular Proteomics
    Apweiler, Rolf
    Aslanidis, Charalampos
    Deufel, Thomas
    Gerstner, Andreas
    Hansen, Jens
    Hochstrasser, Dennis
    Kellner, Roland
    Kubicek, Markus
    Lottspeich, Friedrich
    Maser, Edmund
    Mewes, Hans-Werner
    Meyer, Helmut E.
    Muellner, Stefan
    Mutter, Wolfgang
    Neumaier, Michael
    Nollau, Peter
    Nothwang, Hans G.
    Ponten, Fredrik
    Radbruch, Andreas
    Reinert, Knut
    Rothe, Gregor
    Stockinger, Hannes
    Tarnok, Attila
    Taussig, Mike J.
    Thiel, Andreas
    Thiery, Joachim
    Ueffing, Marius
    Valet, Guenther
    Vandekerckhove, Joel
    Wagener, Christoph
    Wagner, Oswald
    Schmitz, Gerd
    [J]. CYTOMETRY PART A, 2009, 75A (10) : 816 - 832
  • [4] Biomarkers and surrogate endpoints: Preferred definitions and conceptual framework
    Atkinson, AJ
    Colburn, WA
    DeGruttola, VG
    DeMets, DL
    Downing, GJ
    Hoth, DF
    Oates, JA
    Peck, CC
    Schooley, RT
    Spilker, BA
    Woodcock, J
    Zeger, SL
    [J]. CLINICAL PHARMACOLOGY & THERAPEUTICS, 2001, 69 (03) : 89 - 95
  • [5] A "de-streaking" method for two-dimensional electrophoresis using the reducing agent tris(2-carboxyethyl)-phosphine hydrochloride and alkylating agent vinylpyridine
    Bai, FJ
    Liu, S
    Witzmann, FA
    [J]. PROTEOMICS, 2005, 5 (08) : 2043 - 2047
  • [6] Search for a diagnostic/prognostic biomarker for the brain cancer glioblastoma multiforme by 2D-DIGE-MS technique
    Banerjee, Hirendra Nath
    Mahaffey, Kelly
    Riddick, Eilena
    Banerjee, Arnold
    Bhowmik, Niladri
    Patra, Manomita
    [J]. MOLECULAR AND CELLULAR BIOCHEMISTRY, 2012, 367 (1-2) : 59 - 63
  • [7] Expression of the Stress Response Oncoprotein LEDGF/p75 in Human Cancer: A Study of 21 Tumor Types
    Basu, Anamika
    Rojas, Heather
    Banerjee, Hiya
    Cabrera, Irena B.
    Perez, Kayla Y.
    De Leon, Marino
    Casiano, Carlos A.
    [J]. PLOS ONE, 2012, 7 (01):
  • [8] Protein Microarrays: Novel Developments and Applications
    Berrade, Luis
    Garcia, Angie E.
    Camarero, Julio A.
    [J]. PHARMACEUTICAL RESEARCH, 2011, 28 (07) : 1480 - 1499
  • [9] Mass spectrometry-based targeted quantitative proteomics: Achieving sensitive and reproducible detection of proteins
    Boja, Emily S.
    Rodriguez, Henry
    [J]. PROTEOMICS, 2012, 12 (08) : 1093 - 1110
  • [10] "The quest for biomarkers": Are we on the right technical track?
    Boschetti, Egisto
    Chung, Maxey C. M.
    Righetti, Pier Giorgio
    [J]. PROTEOMICS CLINICAL APPLICATIONS, 2012, 6 (1-2) : 22 - 41