Genetic risk variants in African Americans with multiple sclerosis

被引:46
|
作者
Isobe, Noriko [1 ]
Gourraud, Pierre-Antoine [1 ]
Harbo, Hanne F. [2 ]
Caillier, Stacy J. [1 ]
Santaniello, Adam [1 ]
Khankhanian, Pouya [1 ]
Maiers, Martin [3 ]
Spellman, Stephen [4 ]
Cereb, Nezih [5 ]
Yang, SooYoung [5 ]
Pando, Marcelo J. [6 ]
Piccio, Laura [7 ]
Cross, Anne H. [7 ]
De Jager, Philip L. [8 ,9 ,10 ,11 ,12 ]
Cree, Bruce A. C. [1 ]
Hauser, Stephen L. [1 ]
Oksenberg, Jorge R. [1 ]
机构
[1] Univ Calif San Francisco, Sch Med, Dept Neurol, San Francisco, CA 94143 USA
[2] Oslo Univ Hosp, Dept Neurol, Oslo, Norway
[3] Natl Marrow Donor Program, Minneapolis, MN USA
[4] Ctr Int Blood & Marrow Transplant Res, Minneapolis, MN USA
[5] Histogenetics LLC, Ossining, NY USA
[6] Stanford Univ, Dept Pathol, Sch Med, Stanford, CA 94305 USA
[7] Washington Univ, Dept Neurol, St Louis, MO USA
[8] Brigham & Womens Hosp, Dept Neurol, Program Translat NeuroPsychiat Genom, Boston, MA 02115 USA
[9] Brigham & Womens Hosp, Dept Psychiat, Program Translat NeuroPsychiat Genom, Boston, MA 02115 USA
[10] Harvard Univ, Sch Med, Boston, MA USA
[11] Harvard Univ, Broad Inst, Cambridge, MA 02138 USA
[12] MIT, Cambridge, MA 02139 USA
关键词
GENOME-WIDE ASSOCIATION; SUSCEPTIBILITY LOCI; INFORMATIVE MARKERS; ALLELES; HLA; ADMIXTURE; METAANALYSIS; POPULATION; ANCESTRY; HLA-DRB1;
D O I
10.1212/WNL.0b013e31829bfe2f
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Objectives: To assess the association of established multiple sclerosis (MS) risk variants in 3,254 African Americans (1,162 cases and 2,092 controls). Methods: Human leukocyte antigen (HLA)-DRB1, HLA-DQB1, and HLA-A alleles were typed by molecular techniques. Single nucleotide polymorphism (SNP) genotyping was conducted for 76 MS-associated SNPs and 52 ancestry informative marker SNPs selected throughout the genome. Self-declared ancestry was refined by principal component analysis of the ancestry informative marker SNPs. An ancestry-adjusted multivariate model was applied to assess genetic associations. Results: The following major histocompatibility complex risk alleles were replicated: HLA-DRB1(star) 15:01 (odds ratio [OR] = 2.02 [95% confidence interval: 1.54-2.63], p = 2.50e-07), HLA-DRB1(star) 03: 01 (OR = 1.58 [1.29-1.94], p = 1.11e-05), as well as HLA-DRB1(star) 04:05 (OR = 2.35 [1.26-4.37], p = 0.007) and the African-specific risk allele of HLA-DRB1(star) 15:03 (OR = 1.26 [1.05-1.51], p = 0.012). The protective association of HLA-A(star) 02: 01 was confirmed (OR = 0.72 [0.55-0.93], p = 0.013). None of the HLA-DQB1 alleles were associated with MS. Using a significance threshold of p < 0.01, outside the major histocompatibility complex region, 8MS SNPs were also found to be associated with MS in African Americans. Conclusion: MS genetic risk in African Americans only partially overlaps with that of Europeans and could explain the difference of MS prevalence between populations.
引用
收藏
页码:219 / 227
页数:9
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