myGrid: personalised bioinformatics on the information grid

被引：177

作者：

Stevens, Robert D. ^{[1
]}

Robinson, Alan J. ^{[2
]}

Goble, Carole A. ^{[1
]}

机构：

[1] Univ Manchester, Dept Comp Sci, Manchester M13 9PL, Lancs, England

[2] EMBL Outstn Hinxton, European Bioinformat Inst, Cambridge CB10 1SD, England

来源：

BIOINFORMATICS | 2003年 / 19卷

关键词：

D O I：

10.1093/bioinformatics/btg1041

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: The (my)Grid project aims to exploit Grid technology, with an emphasis on the Information Grid, and provide middleware layers that make it appropriate for the needs of bioinformatics. (my)Grid is building high level services for data and application integration such as resource discovery, workflow enactment and distributed query processing. Additional services are provided to support the scientific method and best practice found at the bench but often neglected at the workstation, notably provenance management, change notification and personalisation. Results: We give an overview of these services and their metadata. In particular, semantically rich metadata expressed using ontologies necessary to discover, select and compose services into dynamic workflows.

引用

页码：i302 / i304

页数：3

共 12 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2]

[Anonymous], 1998, GRID BLUEPRINT NEW C

[3] An ontology for bioinformatics applications [J].

Baker, PG ;

Goble, CA ;

Bechhofer, S ;

Paton, NW ;

Stevens, R ;

Brass, A .

BIOINFORMATICS, 1999, 15 (06) :510-520

[4]

Carr L., 2001, P 10 INT WORLD WID W, P334

[5] Circadian regulation of gene expression systems in the Drosophila head [J].

Claridge-Chang, A ;

Wijnen, H ;

Naef, F ;

Boothroyd, C ;

Rajewsky, N ;

Young, MW .

NEURON, 2001, 32 (04) :657-671

[6]

Etzold T, 1996, METHOD ENZYMOL, V266, P114

[7]

Foster I.K., 2002, Global Grid Forum

[8]

OINN T, 2003, BIOINFORMATICS S1, V19

[9] EMBOSS: The European molecular biology open software suite [J].

Rice, P ;

Longden, I ;

Bleasby, A .

TRENDS IN GENETICS, 2000, 16 (06) :276-277

[10]

Smith J, 2002, LECT NOTES COMPUT SC, V2536, P279

← 1 2 →