Successes and challenges of using whole exome sequencing to identify novel genes underlying an inherited predisposition for thoracic aortic aneurysms and acute aortic dissections

被引:37
作者
Milewicz, Dianna M. [1 ]
Regalado, Ellen S. [1 ]
Shendure, Jay [2 ]
Nickerson, Deborah A. [2 ]
Guo, Dong-chuan [1 ]
机构
[1] Univ Texas Hlth Sci Ctr Houston UT Hlth, Dept Internal Med, Div Med Genet, Houston, TX 77030 USA
[2] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
关键词
COPY-NUMBER VARIATION; SMOOTH-MUSCLE; TGFBR2; MUTATIONS; MARFAN-SYNDROME; FIBRILLIN-1; CONTRACTION; RELAXATION; PATTERNS; FAMILIES; CAPTURE;
D O I
10.1016/j.tcm.2013.06.004
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Thoracic aortic aneurysms involving the aortic root and/or ascending aorta can lead to acute aortic dissections. Approximately 20% of patients with thoracic aortic aneurysms and dissections (TAAD) have a family history of the disease, referred to as familial TAAD (FTAAD) that can be inherited in an autosomal dominant manner with variable expression with respect to disease presentation, age of onset and associated features. Whole exome sequencing (WES) has been used to identify causative mutations in novel genes for TAAD. The strategy used to reduce the large number of rare variants identified using WES is to sequence distant relatives with TAAD and filter for heterozygous rare variants that are shared between the relatives, predicted to disrupt protein function and segregate with the TAAD phenotype in other family members. Putative genes are validated by identifying additional families with a causative mutation in the genes. This approach has successfully identified novel genes for FTAAD. Published by Elsevier Inc.
引用
收藏
页码:53 / 60
页数:8
相关论文
共 43 条
[31]   Targeted capture and massively parallel sequencing of 12 human exomes [J].
Ng, Sarah B. ;
Turner, Emily H. ;
Robertson, Peggy D. ;
Flygare, Steven D. ;
Bigham, Abigail W. ;
Lee, Choli ;
Shaffer, Tristan ;
Wong, Michelle ;
Bhattacharjee, Arindam ;
Eichler, Evan E. ;
Bamshad, Michael ;
Nickerson, Deborah A. ;
Shendure, Jay .
NATURE, 2009, 461 (7261) :272-U153
[32]   Mutations in transforming growth factor-β receptor type II cause familial thoracic aortic aneurysms and dissections [J].
Pannu, H ;
Fadulu, V ;
Chang, J ;
Lafont, A ;
Hasham, SN ;
Sparks, E ;
Giampietro, PF ;
Zaleski, C ;
Estrera, AL ;
Safi, HJ ;
Shete, S ;
Willing, MC ;
Raman, CS ;
Milewicz, DM .
CIRCULATION, 2005, 112 (04) :513-520
[33]   MYH11 mutations result in a distinct vascular pathology driven by insulin-like growth factor 1 and angiotensin II [J].
Pannu, Hariyadarshi ;
Tran-Fadulu, Van ;
Papke, Christina L. ;
Scherer, Steve ;
Liu, Yaozhong ;
Presley, Caroline ;
Guo, Dongchuan ;
Estrera, Anthony L. ;
Safi, Hazim J. ;
Brasier, Allan R. ;
Vick, G. Wesley ;
Marian, A. J. ;
Raman, C. S. ;
Buja, L. Maximilian ;
Milewicz, Dianna M. .
HUMAN MOLECULAR GENETICS, 2007, 16 (20) :2453-2462
[34]   Autosomal Dominant Inheritance of a Predisposition to Thoracic Aortic Aneurysms and Dissections and Intracranial Saccular Aneurysms [J].
Regalado, Ellen ;
Medrek, Sarah ;
Van Tran-Fadulu ;
Guo, Dong-Chuan ;
Pannu, Hariyadarshi ;
Golabbakhsh, Hossein ;
Smart, Suzanne ;
Chen, Julia H. ;
Shete, Sanjay ;
Kim, Dong H. ;
Stern, Ralph ;
Braverman, Alan C. ;
Milewicz, Dianna M. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2011, 155A (09) :2125-2130
[35]   Exome Sequencing Identifies SMAD3 Mutations as a Cause of Familial Thoracic Aortic Aneurysm and Dissection With Intracranial and Other Arterial Aneurysms [J].
Regalado, Ellen S. ;
Guo, Dong-chuan ;
Villamizar, Carlos ;
Avidan, Nili ;
Gilchrist, Dawna ;
McGillivray, Barbara ;
Clarke, Lorne ;
Bernier, Francois ;
Santos-Cortez, Regie L. ;
Leal, Suzanne M. ;
Bertoli-Avella, Aida M. ;
Shendure, Jay ;
Rieder, Mark J. ;
Nickerson, Deborah A. ;
Milewicz, Dianna M. .
CIRCULATION RESEARCH, 2011, 109 (06) :680-U220
[36]   Fibrillin-1 and fibulin-2 interact and are colocalized in some tissues [J].
Reinhardt, DP ;
Sasaki, T ;
Dzamba, BJ ;
Keene, DR ;
Chu, ML ;
Gohring, W ;
Timpl, R ;
Sakai, LY .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (32) :19489-19496
[37]   Identification of 23 TGFBR2 and 6 TGFBR1 Gene Mutations and Genotype-phenotype Investigations in 457 Patients with Marfan Syndrome Type I and II, Loeys-Dietz Syndrome and Related Disorders [J].
Stheneur, Chantal ;
Collod-Beroud, Gwenaelle ;
Faivre, Laurence ;
Gouya, Laurent ;
Sultan, Gilles ;
Le Parc, Jean-Marie ;
Moura, Bertrand ;
Attias, David ;
Muti, Christine ;
Sznajder, Marc ;
Claustres, Mireille ;
Junien, Claudine ;
Baumann, Clarisse ;
Cormier-Daire, Valerie ;
Rio, Marlene ;
Lyonnet, Stanislas ;
Plauchu, Henri ;
Lacombe, Didier ;
Chevallier, Bertrand ;
Jondeau, Guillaume ;
Boileau, Catherine .
HUMAN MUTATION, 2008, 29 (11) :E284-E295
[38]   Analysis of multigenerational families with thoracic aortic aneurysms and dissections due to TGFBR1 or TGFBR2 mutations [J].
Tran-Fadulu, V. ;
Pannu, H. ;
Kim, D. H. ;
Vick, G. W., III ;
Lonsford, C. M. ;
Lafont, A. L. ;
Boccalandro, C. ;
Smart, S. ;
Peterson, K. L. ;
Hain, J. Zenger ;
Willing, M. C. ;
Coselli, J. S. ;
LeMaire, S. A. ;
Ahn, C. ;
Byers, P. H. ;
Milewicz, D. M. .
JOURNAL OF MEDICAL GENETICS, 2009, 46 (09) :607-613
[39]   Familial thoracic aortic aneurysms and dissections: Three families with early-onset ascending and descending aortic dissections in women [J].
Tran-Fadulu, Van ;
Chen, Julia H. ;
Lemuth, Danielle ;
Neichoy, Bo T. ;
Yuan, Jiuhong ;
Gomes, Nathan ;
Sparks, Elizabeth ;
Kramer, Larry A. ;
Guo, Dongchuan ;
Pannu, Hariyadarshi ;
Braverman, Alan C. ;
Shete, Sanjay ;
Milewicz, Dianna M. .
AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2006, 140A (11) :1196-1202
[40]   Massively parallel exon capture and library-free resequencing across 16 genomes [J].
Turner, Emily H. ;
Lee, Choli ;
Ng, Sarah B. ;
Nickerson, Deborah A. ;
Shendure, Jay .
NATURE METHODS, 2009, 6 (05) :315-316