A coupling system of capillary gel electrophoresis with inductively coupled plasma-mass spectrometry for the determination of double stranded DNA fragments

被引:10
作者
Fujii, Shin-ichiro [1 ]
Inagaki, Kazumi [1 ]
Miyashita, Shin-ichi [1 ]
Nagasawa, Keisuke [2 ]
Chiba, Koichi [1 ]
Takatsu, Akiko [1 ]
机构
[1] Natl Inst Adv Ind Sci & Technol, NMIJ, Tsukuba, Ibaraki 3058563, Japan
[2] Tokyo Denki Univ, Grad Sch Engn, Adachi Ku, Tokyo 1208551, Japan
基金
日本学术振兴会;
关键词
ISOTOPE-DILUTION; ICP-MS; ONLINE; SPECIATION; QUANTIFICATION; PROTEINS;
D O I
10.1039/c3mt00057e
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The coupling system of capillary gel electrophoresis (CGE) and inductively coupled plasma-mass spectrometry (ICP-MS) was newly developed and successfully applied to the double-stranded (ds) DNA quantification. The developed system combines the separation technique for large biomolecules and element selective detection of ICP-MS. This coupling was achieved by using the modified high performance concentric nebulizer (HPCN) with the PTFE tube (HPCN-PT), which can produce the liquid jet by the flow focusing effect. The HPCN-PT effectively nebulizes the highly viscous solution containing gel buffer even at a lowflow rate. At a liquid flowrate of 0.010 mL min(-1) and a nebulizer gas flow rate of 1 L min(-1), the Sauter mean diameter (D-3,D-2) of primary aerosols generated by the HPCN-PT was 3.4 mu m, and over 90% (v/v) of the aerosol droplets were less than 10 mu m in diameter. The electrophoresis capillary filled with gel buffer was connected to the HPCN-PT via the interface. This interface has two connectors and an electrode that can connect CE and ICP-MS. After the electrophoretic separation at atmospheric pressure, the samples were transferred to the ICP-MS through the interface by applying additional pressure. Fragments of dsDNA, which were commercially available as a ladder marker solution, were successfully separated and analyzed by measuring P-31(+) with CGE-ICP-MS, and a linear calibration curve of the phosphorus standard solution (R-2 = 0.999) was obtained from 2.7 to 27 mg kg(-1). The detection limit (LOD) and absolute detection limit of P were 3.7 mu g kg(-1) and 0.6 pg (equivalent to 6 pg of DNA), respectively. This absolute detection limit value was equal to the conventional fluorescence determination of DNA.
引用
收藏
页码:424 / 428
页数:5
相关论文
共 19 条
[1]   PicoGreen quantitation of DNA: Effective evaluation of samples pre- or post-PCR [J].
Ahn, SJ ;
Costa, J ;
Emanuel, JR .
NUCLEIC ACIDS RESEARCH, 1996, 24 (13) :2623-2625
[2]   On-line coupling of gel electrophoresis (GE) and inductively coupled plasma-mass spectrometry (ICP-MS) for the detection of Fe in metalloproteins [J].
Anorbe, Marta Garijo ;
Messerschmidt, Rgen ;
Feldmann, Ingo ;
Jakubowski, Norbert .
JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY, 2007, 22 (08) :917-924
[3]   Potential Primary Measurement Tool for the Quantification of DNA [J].
Brennan, Ryan G. ;
Rabb, Savelas A. ;
Holden, Marcia J. ;
Winchester, Michael R. ;
Turk, Gregory C. .
ANALYTICAL CHEMISTRY, 2009, 81 (09) :3414-3420
[4]   On-line coupling of gel electrophoresis and inductively coupled plasma-sector field-mass spectrometry for the determination of dsDNA fragments [J].
Brüchert, W ;
Bettmer, J .
ANALYTICAL CHEMISTRY, 2005, 77 (15) :5072-5075
[5]   A novel approach for analysis of oligonucleotide-cisplatin interactions by continuous elution gel electrophoresis coupled to isotope dilution inductively coupled plasma mass spectrometry and matrix-assisted laser desorption/ionization mass spectrometry [J].
Bruechert, Wolfram ;
Krueger, Ralf ;
Tholey, Andreas ;
Montes-Bayon, Maria ;
Bettmer, Joerg .
ELECTROPHORESIS, 2008, 29 (07) :1451-1459
[6]   Gel electrophoresis coupled to inductively coupled plasma-mass spectrometry using species-specific isotope dilution for iodide and iodate determination in aerosols [J].
Bruechert, Wolfram ;
Helfrich, Andreas ;
Zinn, Nico ;
Klimach, Thomas ;
Breckheimer, Markus ;
Chen, Hongwei ;
Lai, Senchao ;
Hoffmann, Thorsten ;
Bettmer, Joerg .
ANALYTICAL CHEMISTRY, 2007, 79 (04) :1714-1719
[7]   DNA quantification approach by GE-ICP-SFMS and complementary total phosphorus determination by ICP-SFMS [J].
Bruechert, Wolfram ;
Bettmer, Joerg .
JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY, 2006, 21 (11) :1271-1276
[8]   Detection of metals in proteins by means of polyacrylamide gel electrophoresis and laser ablation-inductively coupled plasma-mass spectrometry:: Application to selenium [J].
Chéry, CC ;
Günther, D ;
Cornelis, R ;
Vanhaecke, F ;
Moens, L .
ELECTROPHORESIS, 2003, 24 (19-20) :3305-3313
[9]   Quantification of phosphorus in DNA using capillary electrophoresis hyphenated with inductively coupled plasma mass spectrometry [J].
Fujii, Shin-ichiro ;
Inagaki, Kazumi ;
Chiba, Koichi ;
Takatsu, Akiko .
JOURNAL OF CHROMATOGRAPHY A, 2010, 1217 (50) :7921-7925
[10]   Determination of phosphorus using capillary electrophoresis and micro-high-performance liquid chromatography hyphenated with inductively coupled plasma mass spectrometry for the quantification of nucleotides [J].
Fujii, Shin-ichiro ;
Inagaki, Kazumi ;
Takatsu, Akiko ;
Yarita, Takashi ;
Chiba, Koichi .
JOURNAL OF CHROMATOGRAPHY A, 2009, 1216 (44) :7488-7492