Streptomyces herbaceus sp nov., Streptomyces incanus sp nov and Streptomyces pratens sp nov., isolated from the soil of a hay meadow

被引:2
作者
Kim, Byung-Yong [1 ]
Rong, Xiaoying [2 ]
Zucchi, Tiago D. [1 ,3 ]
Bonda, Avinash N. V. [1 ]
Huang, Ying [2 ]
Goodfellow, Michael [1 ]
机构
[1] Newcastle Univ, Sch Biol, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England
[2] Chinese Acad Sci, State Key Lab Microbial Resources, Inst Microbiol, Beijing 100101, Peoples R China
[3] Univ Sao Paulo, ESALQ, Dept Entomol & Acarol, BR-13418900 Piracicaba, Brazil
关键词
COMPLETE GENOME SEQUENCE; HYBRIDIZATION; EVOLUTION; CLADE; CHINA; TREES;
D O I
10.1099/ijs.0.036384-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The taxonomic positions of three streptomycetes isolated from a soil sample from a hay meadow were determined using a polyphasic approach. The isolates had chemical and morphological properties typical of the genus Streptomyces and, in phylogenetic analyses based on 16S rRNA gene sequences, formed a distinct subclade that was most closely related to the Streptomyces prasinus subclade. DNA-DNA relatedness studies showed that the novel strains belonged to three different genomic species. The novel strains could be distinguished from one another and from the type strains of the species classified in the S. prasinus subclade using a combination of genotypic and phenotypic properties. On the basis of these data, it is proposed that the novel strains be assigned to the genus Streptomyces as Streptomyces herbaceus sp. nov., Streptomyces incanus sp. nov. and Streptomyces pratens sp. nov., with BK119(T) (=KACC 21001(T) =CGMCC 4.5797(T)), BK128(T) (=KACC 21002(T) =CGMCC 4.5799(T)) and BK138(T) (=KACC 20904(T) =CGMCC 4.5800(T)) as the respective type strains.
引用
收藏
页码:1908 / 1913
页数:6
相关论文
共 34 条
[1]   The taxonomy of Streptomyces and related genera [J].
Anderson, AS ;
Wellington, EMH .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :797-814
[2]  
[Anonymous], 1990, Technical Note 101
[3]   Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) [J].
Bentley, SD ;
Chater, KF ;
Cerdeño-Tárraga, AM ;
Challis, GL ;
Thomson, NR ;
James, KD ;
Harris, DE ;
Quail, MA ;
Kieser, H ;
Harper, D ;
Bateman, A ;
Brown, S ;
Chandra, G ;
Chen, CW ;
Collins, M ;
Cronin, A ;
Fraser, A ;
Goble, A ;
Hidalgo, J ;
Hornsby, T ;
Howarth, S ;
Huang, CH ;
Kieser, T ;
Larke, L ;
Murphy, L ;
Oliver, K ;
O'Neil, S ;
Rabbinowitsch, E ;
Rajandream, MA ;
Rutherford, K ;
Rutter, S ;
Seeger, K ;
Saunders, D ;
Sharp, S ;
Squares, R ;
Squares, S ;
Taylor, K ;
Warren, T ;
Wietzorrek, A ;
Woodward, J ;
Barrell, BG ;
Parkhill, J ;
Hopwood, DA .
NATURE, 2002, 417 (6885) :141-147
[4]   MENAQUINONE COMPOSITION OF MYCOLIC ACID-CONTAINING ACTINOMYCETES AND SOME SPOROACTINOMYCETES [J].
COLLINS, MD ;
GOODFELLOW, M ;
MINNIKIN, DE ;
ALDERSON, G .
JOURNAL OF APPLIED BACTERIOLOGY, 1985, 58 (01) :77-86
[5]  
Euzeby J.P., 2011, List of prokaryotic names with standing in nomenclature, genus Mycobacterium
[6]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[7]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[8]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[9]   A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature [J].
Gonzalez, JM ;
Saiz-Jimenez, C .
ENVIRONMENTAL MICROBIOLOGY, 2002, 4 (11) :770-773
[10]   The Streptomyces violaceusniger clade:: a home for streptomycetes with rugose ornamented spores [J].
Goodfellow, Michael ;
Kumar, Yashawant ;
Labeda, David P. ;
Sembiring, Langkah .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2007, 92 (02) :173-199