One subgenome to rule them all: underlying mechanisms of subgenome dominance

被引:91
作者
Alger, Elizabeth, I [1 ]
Edger, Patrick P. [1 ]
机构
[1] Michigan State Univ, Dept Hort, E Lansing, MI 48824 USA
基金
美国国家科学基金会;
关键词
GENE-EXPRESSION; TRANSPOSABLE ELEMENTS; GENOME DUPLICATIONS; POLYPLOIDIZATION; DIFFERENTIATION; FRACTIONATION; ANCESTOR; INSIGHTS; BALANCE; HYBRID;
D O I
10.1016/j.pbi.2020.03.004
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Allopolyploids, which are formed from the hybridization of two or more diploid progenitor species, often experience subgenome dominance, where one of the parental genomes (subgenomes) has higher levels of gene expression and ultimately greater gene retention compared to the other subgenomes. Low transposable element (TE) abundance near genes has been associated with the dominant subgenome in several allopolyploids, but TEs are unlikely to be the only causal factor responsible for subgenome expression dominance. In this review, we will examine the role of TEs in subgenome dominance as well as discuss how genetic incompatibilities among subgenomes likely contributes to the rapid emergence of subgenome dominance. Lastly, we highlight several burning questions about subgenome dominance that remain largely unanswered.
引用
收藏
页码:108 / 113
页数:6
相关论文
共 38 条
[1]   Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines [J].
Birchler, James A. ;
Veitia, Reiner A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (37) :14746-14753
[2]   The causes and consequences of subgenome dominance in hybrids and recent polyploids [J].
Bird, Kevin A. ;
VanBuren, Robert ;
Puzey, Joshua R. ;
Edger, Patrick P. .
NEW PHYTOLOGIST, 2018, 220 (01) :87-93
[3]   Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa [J].
Cheng, Feng ;
Sun, Chao ;
Wu, Jian ;
Schnable, James ;
Woodhouse, Margaret R. ;
Liang, Jianli ;
Cai, Chengcheng ;
Freeling, Michael ;
Wang, Xiaowu .
NEW PHYTOLOGIST, 2016, 211 (01) :288-299
[4]  
Chow HT, 2019, CURR OPIN PLANT BIOL, V54, P11
[5]   Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry [J].
Colle, Marivi ;
Leisner, Courtney P. ;
Wai, Ching Man ;
Ou, Shujun ;
Bird, Kevin A. ;
Wang, Jie ;
Wisecaver, Jennifer H. ;
Yocca, Alan E. ;
Alger, Elizabeth I. ;
Tang, Haibao ;
Xiong, Zhiyong ;
Callow, Pete ;
Ben-Zvi, Gil ;
Brodt, Avital ;
Baruch, Kobi ;
Swale, Thomas ;
Shiue, Lily ;
Song, Guo-qing ;
Childs, Kevin L. ;
Schilmiller, Anthony ;
Vorsa, Nicholi ;
Buell, C. Robin ;
VanBuren, Robert ;
Jiang, Ning ;
Edger, Patrick P. .
GIGASCIENCE, 2019, 8 (03)
[6]   Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris [J].
Douglas, Gavin M. ;
Gos, Gesseca ;
Steige, Kim A. ;
Salcedo, Adriana ;
Holm, Karl ;
Josephs, Emily B. ;
Arunkumar, Ramesh ;
Agren, J. Arvid ;
Hazzouri, Khaled M. ;
Wang, Wei ;
Platts, Adrian E. ;
Williamson, Robert J. ;
Neuffer, Barbara ;
Lascoux, Martin ;
Slotte, Tanja ;
Wright, Stephen I. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (09) :2806-2811
[7]   Genome Dominance and Interaction at the Gene Expression Level in Allohexaploid Wheat [J].
Eckardt, Nancy A. .
PLANT CELL, 2014, 26 (05) :1834-1834
[8]   Origin and evolution of the octoploid strawberry genome [J].
Edger, Patrick P. ;
Poorten, Thomasj ;
VanBuren, Robert ;
Hardigan, Michael A. ;
Colle, Marivi ;
McKain, Michael R. ;
Smith, Ronald D. ;
Teresi, Scottj ;
Nelson, Andrew D. L. ;
Wai, Ching Man ;
Alger, Elizabeth, I ;
Bird, Kevin A. ;
Yocca, Alan E. ;
Pumplin, Nathan ;
Ou, Shujun ;
Ben-Zvi, Gil ;
Brode, Avital ;
Baruch, Kobi ;
Swale, Thomas ;
Shiue, Lily ;
Acharya, Charlotte B. ;
Cole, Glenn S. ;
Mower, Jeffrey P. ;
Childs, Kevin L. ;
Jiang, Ning ;
Lyons, Eric ;
Freeling, Michael ;
Puzey, Joshua R. ;
Knapp, Steven J. .
NATURE GENETICS, 2019, 51 (03) :541-+
[9]   Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower [J].
Edger, Patrick P. ;
Smith, Ronald ;
McKain, Michael R. ;
Cooley, Arielle M. ;
Vallejo-Marin, Mario ;
Yuan, Yaowu ;
Bewick, Adam J. ;
Ji, Lexiang ;
Platts, Adrian E. ;
Bowman, Megan J. ;
Childs, Kevin L. ;
Washburn, Jacob D. ;
Schmitz, Robert J. ;
Smith, Gregory D. ;
Pires, J. Chris ;
Puzeyn, Joshua R. .
PLANT CELL, 2017, 29 (09) :2150-2167
[10]   Plant transposable elements: Where genetics meets genomics [J].
Feschotte, C ;
Jiang, N ;
Wessler, SR .
NATURE REVIEWS GENETICS, 2002, 3 (05) :329-341