Bricks and blueprints: methods and standards for DNA assembly

被引:189
作者
Casini, Arturo [1 ]
Storch, Marko [1 ]
Baldwin, Geoffrey S. [1 ]
Ellis, Tom [2 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Dept Life Sci, Ctr Synthet Biol & Innovat, London SW7 2AZ, England
[2] Univ London Imperial Coll Sci Technol & Med, Dept Bioengn, Ctr Synthet Biol & Innovat, London SW7 2AZ, England
基金
英国工程与自然科学研究理事会; 英国生物技术与生命科学研究理事会;
关键词
SYNTHETIC BIOLOGY; IN-VITRO; CHEMICAL-SYNTHESIS; CLONING; CONSTRUCTION; DESIGN; TECHNOLOGIES; ALGORITHMS; PLATFORM; PLASMID;
D O I
10.1038/nrm4014
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
DNA assembly is a key part of constructing gene expression systems and even whole chromosomes. In the past decade, a plethora of powerful new DNA assembly methods - including Gibson Assembly, Golden Gate and ligase cycling reaction (LCR) - have been developed. In this Innovation article, we discuss these methods as well as standards such as the modular cloning (MoClo) system, GoldenBraid, modular overlap-directed assembly with linkers (MODAL) and PaperClip, which have been developed to facilitate a streamlined assembly workflow, to aid the exchange of material between research groups and to create modular reusable DNA parts.
引用
收藏
页码:568 / 576
页数:9
相关论文
共 74 条
[1]   A suite of Gateway® cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae [J].
Alberti, Simon ;
Gitler, Aaron D. ;
Lindquist, Susan .
YEAST, 2007, 24 (10) :913-919
[2]   BglBricks: A flexible standard for biological part assembly [J].
Anderson J.C. ;
Dueber J.E. ;
Leguia M. ;
Wu G.C. ;
Arkin A.P. ;
Keasling J.D. .
Journal of Biological Engineering, 4 (1)
[3]   Total Synthesis of a Functional Designer Eukaryotic Chromosome [J].
Annaluru, Narayana ;
Muller, Heloise ;
Mitchell, Leslie A. ;
Ramalingam, Sivaprakash ;
Stracquadanio, Giovanni ;
Richardson, Sarah M. ;
Dymond, Jessica S. ;
Kuang, Zheng ;
Scheifele, Lisa Z. ;
Cooper, Eric M. ;
Cai, Yizhi ;
Zeller, Karen ;
Agmon, Neta ;
Han, Jeffrey S. ;
Hadjithomas, Michalis ;
Tullman, Jennifer ;
Caravelli, Katrina ;
Cirelli, Kimberly ;
Guo, Zheyuan ;
London, Viktoriya ;
Yeluru, Apurva ;
Murugan, Sindurathy ;
Kandavelou, Karthikeyan ;
Agier, Nicolas ;
Fischer, Gilles ;
Yang, Kun ;
Martin, J. Andrew ;
Bilgel, Murat ;
Bohutski, Pavlo ;
Boulier, Kristin M. ;
Capaldo, Brian J. ;
Chang, Joy ;
Charoen, Kristie ;
Choi, Woo Jin ;
Deng, Peter ;
DiCarlo, James E. ;
Doong, Judy ;
Dunn, Jessilyn ;
Feinberg, Jason I. ;
Fernandez, Christopher ;
Floria, Charlotte E. ;
Gladowski, David ;
Hadidi, Pasha ;
Ishizuka, Isabel ;
Jabbari, Javaneh ;
Lau, Calvin Y. L. ;
Lee, Pablo A. ;
Li, Sean ;
Lin, Denise ;
Linder, Matthias E. .
SCIENCE, 2014, 344 (6179) :55-58
[4]  
Annaluru Narayana, 2012, Methods Mol Biol, V852, P77, DOI 10.1007/978-1-61779-564-0_7
[5]  
Appleton E, 2014, NAT METHODS, V11, P657, DOI [10.1038/NMETH.2939, 10.1038/nmeth.2939]
[6]   A Modular Plasmid Assembly Kit for Multigene Expression, Gene Silencing and Silencing Rescue in Plants [J].
Binder, Andreas ;
Lambert, Jayne ;
Morbitzer, Robert ;
Popp, Claudia ;
Ott, Thomas ;
Lahaye, Thomas ;
Parniske, Martin .
PLOS ONE, 2014, 9 (02)
[7]   USER™ friendly DNA engineering and cloning method by uracil excision [J].
Bitinaite, Jurate ;
Rubino, Michelle ;
Varma, Kamini Hingorani ;
Schildkraut, Ira ;
Vaisvila, Romualdas ;
Vaiskunaite, Rita .
NUCLEIC ACIDS RESEARCH, 2007, 35 (06) :1992-2002
[8]   A brief history of synthetic biology [J].
Cameron, D. Ewen ;
Bashor, Caleb J. ;
Collins, James J. .
NATURE REVIEWS MICROBIOLOGY, 2014, 12 (05) :381-390
[9]   Contextualizing context for synthetic biology - identifying causes of failure of synthetic biological systems [J].
Cardinale, Stefano ;
Arkin, Adam Paul .
BIOTECHNOLOGY JOURNAL, 2012, 7 (07) :856-866
[10]   R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences [J].
Casini, Arturo ;
Christodoulou, Georgia ;
Freemont, Paul S. ;
Baldwin, Geoff S. ;
Ellis, Tom ;
MacDonald, James T. .
ACS SYNTHETIC BIOLOGY, 2014, 3 (08) :525-528