Transparency and reproducibility in artificial intelligence

被引:286
作者
Haibe-Kains, Benjamin [1 ,2 ,3 ,4 ,5 ]
Adam, George Alexandru [3 ,5 ]
Hosny, Ahmed [6 ,7 ]
Khodakarami, Farnoosh [1 ,2 ]
Shraddha, Thakkar [36 ,37 ,38 ,39 ,40 ,41 ,42 ,43 ]
Kusko, Rebecca [37 ]
Sansone, Susanna-Assunta [38 ]
Tong, Weida [36 ]
Wolfinger, Russ D. [39 ]
Mason, Christopher E. [40 ]
Jones, Wendell [41 ]
Dopazo, Joaquin [42 ]
Furlanello, Cesare [43 ]
Waldron, Levi [8 ,9 ]
Wang, Bo [2 ,3 ,5 ,10 ,11 ]
McIntosh, Chris [2 ,5 ,10 ]
Goldenberg, Anna [3 ,5 ,12 ,13 ]
Kundaje, Anshul [14 ,15 ]
Greene, Casey S. [16 ,17 ]
Broderick, Tamara [18 ]
Hoffman, Michael M. [1 ,2 ,3 ,5 ]
Leek, Jeffrey T. [19 ]
Korthauer, Keegan [20 ,21 ]
Huber, Wolfgang [22 ]
Brazma, Alvis [23 ]
Pineau, Joelle [24 ,25 ]
Tibshirani, Robert [26 ,27 ]
Hastie, Trevor [26 ,27 ]
Ioannidis, John P. A. [26 ,27 ,28 ,29 ,30 ]
Quackenbush, John [31 ,32 ,33 ]
Aerts, Hugo J. W. L. [6 ,7 ,34 ,35 ]
机构
[1] Univ Hlth Network, Princess Margaret Canc Ctr, Toronto, ON, Canada
[2] Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
[3] Univ Toronto, Dept Comp Sci, Toronto, ON, Canada
[4] Ontario Inst Canc Res, Toronto, ON, Canada
[5] Vector Inst Artificial Intelligence, Toronto, ON, Canada
[6] Harvard Med Sch, Brigham & Womens Hosp, Artificial Intelligence Med AIM Program, Boston, MA 02115 USA
[7] Harvard Med Sch, Radiat Oncol & Radiol, Dana Farber Canc Inst, Brigham & Womens Hosp, Boston, MA 02115 USA
[8] CUNY, Grad Sch Publ Hlth & Hlth Policy, Dept Epidemiol & Biostat, New York, NY 10021 USA
[9] CUNY, Grad Sch Publ Hlth & Hlth Policy, Inst Implementat Sci Populat Hlth, New York, NY 10021 USA
[10] Univ Hlth Network, Peter Munk Cardiac Ctr, Toronto, ON, Canada
[11] Univ Toronto, Dept Lab Med & Pathobiol, Toronto, ON, Canada
[12] SickKids Res Inst, Toronto, ON, Canada
[13] CIFAR, Child & Brain Dev Program, Toronto, ON, Canada
[14] Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA
[15] Stanford Univ, Dept Comp Sci, Stanford, CA 94305 USA
[16] Univ Penn, Perelman Sch Med, Dept Syst Pharmacol & Translat Therapeut, Philadelphia, PA 19104 USA
[17] Alexs Lemonade Stand Fdn, Childhood Canc Data Lab, Philadelphia, PA USA
[18] MIT, Dept Elect Engn & Comp Sci, Cambridge, MA 02139 USA
[19] Johns Hopkins Bloomberg Sch Publ Hlth, Dept Biostat, Baltimore, MD USA
[20] Univ British Columbia, Dept Stat, Vancouver, BC, Canada
[21] BC Childrens Hosp Res Inst, Vancouver, BC, Canada
[22] European Mol Biol Lab, Genome Biol Unit, Heidelberg, Germany
[23] EMBL EBI, European Mol Biol Lab, European Bioinformat Inst, Hinxton, England
[24] McGill Univ, Montreal, PQ, Canada
[25] Montreal Inst Learning Algorithms, Quebec City, PQ, Canada
[26] Stanford Univ, Dept Stat, Sch Humanities & Sci, Stanford, CA 94305 USA
[27] Stanford Univ, Sch Med, Dept Biomed Data Sci, Stanford, CA 94305 USA
[28] Stanford Univ, Dept Med, Sch Med, Stanford, CA 94305 USA
[29] Meta Res Innovat Ctr Stanford METRICS, Stanford, CA USA
[30] Stanford Univ, Sch Med, Dept Epidemiol & Populat Hlth, Stanford, CA 94305 USA
[31] Harvard TH Chan Sch Publ Hlth, Dept Biostat, Boston, MA USA
[32] Brigham & Womens Hosp, Channing Div Network Med, 75 Francis St, Boston, MA 02115 USA
[33] Dana Farber Canc Inst, Dept Data Sci, Boston, MA 02115 USA
[34] Maastricht Univ, Radiol & Nucl Med, Maastricht, Netherlands
[35] Harvard Med Sch, Massachusetts Gen Hosp, Cardiovasc Imaging Res Ctr, Boston, MA 02115 USA
[36] US FDA, Natl Ctr Toxicol Res, Jefferson, AR 72079 USA
[37] Immuneering Corp, Cambridge, MA USA
[38] Univ Oxford, Oxford E Res Ctr, Engn Sci Dept, Oxford, England
[39] SAS Inst Inc, Cary, NC USA
[40] Weill Cornell Med, New York, NY USA
[41] Q2 Solut, Morrisville, NC USA
[42] Hosp Virgen del Rocio, Seville, Spain
[43] Fdn Bruno Kessler, Trento, Italy
基金
英国生物技术与生命科学研究理事会;
关键词
AI;
D O I
10.1038/s41586-020-2766-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
引用
收藏
页码:E14 / U7
页数:7
相关论文
共 14 条
[1]   Toward unrestricted use of public genomic data [J].
Amann, Rudolf I. ;
Baichoo, Shakuntala ;
Blencowe, Benjamin J. ;
Bork, Peer ;
Borodovsky, Mark ;
Brooksbank, Cath ;
Chain, Patrick S. G. ;
Colwell, Rita R. ;
Daffonchio, Daniele G. ;
Danchin, Antoine ;
de Lorenzo, Victor ;
Dorrestein, Pieter C. ;
Finn, Robert D. ;
Fraser, Claire M. ;
Gilbert, Jack A. ;
Hallam, Steven J. ;
Hugenholtz, Philip ;
Ioannidis, John P. A. ;
Jansson, Janet K. ;
Kim, Jihyun F. ;
Klenk, Hans-Peter ;
Klotz, Martin G. ;
Knight, Rob ;
Konstantinidis, Konstantinos T. ;
Kyrpides, Nikos C. ;
Mason, Christopher E. ;
McHardy, Alice C. ;
Meyer, Folker ;
Ouzounis, Christos A. ;
Patrinos, Aristides A. N. ;
Podar, Mircea ;
Pollard, Katherine S. ;
Ravel, Jacques ;
Munoz, Alejandro Reyes ;
Roberts, Richard J. ;
Rossello-Mora, Ramon ;
Sansone, Susanna-Assunta ;
Schloss, Patrick D. ;
Schriml, Lynn M. ;
Setubal, Jogo C. ;
Sorek, Rotem ;
Stevens, Rick L. ;
Tiedje, James M. ;
Turjanski, Adrian ;
Tyson, Gene W. ;
Ussery, David W. ;
Weinstock, George M. ;
White, Owen ;
Whitman, William B. ;
Xenarios, Ioannis .
SCIENCE, 2019, 363 (6425) :350-+
[2]  
Bluemke DA, 2019, RADIOLOGY, V293, P315, DOI [10.1148/radiol.2019191911, DOI 10.1148/RADIOL.2019191911]
[3]   Exploration, Inference, and Prediction in Neuroscience and Biomedicine [J].
Bzdok, Danilo ;
Ioannidis, John P. A. .
TRENDS IN NEUROSCIENCES, 2019, 42 (04) :251-262
[4]  
Carlson Bob, 2012, Biotechnol Healthc, V9, P17
[5]  
Crane M., 2018, Transactions of the Association for Computational Linguistics, V6, P241, DOI [DOI 10.1162/TACL_A_00018, 10.1162/tacla00018, DOI 10.1162/TACLA00018]
[6]  
Gundersen OE, 2018, AAAI CONF ARTIF INTE, P1644
[7]   On Reproducible AI: Towards Reproducible Research, Open Science, and Digital Scholarship in AI Publications [J].
Gundersen, Odd Erik ;
Gil, Yolanda ;
Aha, David W. .
AI MAGAZINE, 2018, 39 (03) :56-68
[8]  
Hutson M, 2018, SCIENCE, V359, P725, DOI 10.1126/science.359.6377.725
[9]   A curated mammography data set for use in computer-aided detection and diagnosis research [J].
Lee, Rebecca Sawyer ;
Gimenez, Francisco ;
Hoogi, Assaf ;
Miyake, Kanae Kawai ;
Gorovoy, Mia ;
Rubin, Daniel L. .
SCIENTIFIC DATA, 2017, 4
[10]   International evaluation of an AI system for breast cancer screening [J].
McKinney, Scott Mayer ;
Sieniek, Marcin ;
Godbole, Varun ;
Godwin, Jonathan ;
Antropova, Natasha ;
Ashrafian, Hutan ;
Back, Trevor ;
Chesus, Mary ;
Corrado, Greg C. ;
Darzi, Ara ;
Etemadi, Mozziyar ;
Garcia-Vicente, Florencia ;
Gilbert, Fiona J. ;
Halling-Brown, Mark ;
Hassabis, Demis ;
Jansen, Sunny ;
Karthikesalingam, Alan ;
Kelly, Christopher J. ;
King, Dominic ;
Ledsam, Joseph R. ;
Melnick, David ;
Mostofi, Hormuz ;
Peng, Lily ;
Reicher, Joshua Jay ;
Romera-Paredes, Bernardino ;
Sidebottom, Richard ;
Suleyman, Mustafa ;
Tse, Daniel ;
Young, Kenneth C. ;
De Fauw, Jeffrey ;
Shetty, Shravya .
NATURE, 2020, 577 (7788) :89-+