Stabilizing osmolytes' effects on the structure, stability and function of tc-tenecteplase: A one peptide bond digested form of tenecteplase

被引:5
作者
Bayat, Mandieh [1 ]
Karami, Leila [2 ]
Gourabi, Hamid [1 ]
Ahmad, Faizan [3 ]
Dormiani, Kianoush [5 ]
Esfahani, Mohammad H. Nasr [5 ]
Saboury, Ali A. [4 ]
机构
[1] Royan Inst, Dept Genet, Reprod Biomed Res Ctr, Tehran, Iran
[2] Kharazmi Univ, Fac Biol Sci, Dept Cell & Mol Biol, Tehran, Iran
[3] Jamia Millia Islamia, Ctr Interdisciplinary Res Basic Sci, New Delhi 110025, India
[4] Univ Tehran, Inst Biochem & Biophys, Tehran, Iran
[5] ACECR, Royan Inst Biotechnol, Dept Mol Biotechnol, Cell Sci Res Ctr, Esfahan, Iran
基金
美国国家科学基金会;
关键词
Two-chain tenecteplase (tc-TNK); Single-chain tenecteplase (sc-INK); Thermal unfolding; TRIMETHYLAMINE-N-OXIDE; PROTEIN DENATURATION; MOLECULAR-DYNAMICS; SECONDARY STRUCTURE; UREA; WATER; COUNTERACTION; MECHANICS; DESIGN; ENERGY;
D O I
10.1016/j.ijbiomac.2019.03.035
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Organic osmolytes, as major cellular compounds, cause protein stabilization in the native form. In the present study, the possible chaperone effects of the three naturally occurring osmolytes on the two-chain form of tenecteplase (tc-TNK), a recombinant, genetically engineered mutant tissue plasminogen activator, have been explored by using circular dichroism, steady-state fluorescence, UV-Visible spectroscopy, and in silico experiments. The tc-TNK is derived from the one-chain protein upon disruption of one peptide bond. Thermal denaturation experiments showed a slightly more stabilizing effect of the three co-solvents on the single-chain TNK (sc-TNK) in comparison to that on tc-TNK. Unlike single-chain tenecteplase, the two-chain form undergoes reversible denaturation which is somehow perturbed in some cases as the result of the presence of osmolytes. Very minor changes in the secondary structure and the tertiary structure were observed. The molecular dynamics simulations and comparative structural analysis of catalytic domain of the protein in the single-chain and two-chain forms in pure water, mannitol/water, trehalose/water, and sucrose/water showed that while the stabilizing effect of the three osmolytes on tc-TNK might be induced by preferential accumulation of these molecules around the nonpolar and aromatic residues, that is to say, fewer water-hydrophobic residues' interactions in tc-TNK, sc-TNK is stabilized by preferential exclusion effect. (C) 2019 Elsevier B.V. All rights reserved.
引用
收藏
页码:863 / 877
页数:15
相关论文
共 63 条
[1]  
[Anonymous], 2007, World Appl. Sci. J, DOI DOI 10.1016/J.BPC.2011.05.012
[2]   Correlation of Structural Order, Anomalous Density, and Hydrogen Bonding Network of Liquid Water [J].
Bandyopadhyay, Dibyendu ;
Mohan, S. ;
Ghosh, S. K. ;
Choudhury, Niharendu .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (29) :8831-8843
[3]  
Bayat M., 2018, J BIOTECHNOL
[4]  
Beg I., 2016, J BIOL CHEM
[5]   Counteraction of urea-induced protein denaturation by trimethylamine N-oxide:: A chemical chaperone at atomic resolution [J].
Bennion, BJ ;
Daggett, V .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (17) :6433-6438
[6]   The molecular basis for the chemical denaturation of proteins by urea [J].
Bennion, BJ ;
Daggett, V .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (09) :5142-5147
[7]   Principles of protein structural ensemble determination [J].
Bonomi, Massimiliano ;
Heller, Gabriella T. ;
Camilloni, Carlo ;
Vendruscolo, Michele .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2017, 42 :106-116
[8]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)
[9]   Effect of urea on peptide conformation in water: Molecular dynamics and experimental characterization [J].
Caballero-Herrera, A ;
Nordstrand, K ;
Berndt, KD ;
Nilsson, L .
BIOPHYSICAL JOURNAL, 2005, 89 (02) :842-857
[10]   Cosolvent Effects on Protein Stability [J].
Canchi, Deepak R. ;
Garcia, Angel E. .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 64, 2013, 64 :273-293