The effect of aqueous solutions of trimethylamine-N-oxide on pressure induced modifications of hydrophobic interactions

被引:17
作者
Sarma, Rahul [1 ]
Paul, Sandip [1 ]
机构
[1] Indian Inst Technol, Dept Chem, Gauhati 781039, Assam, India
关键词
MOLAR VOLUME CHANGE; DEEP-SEA ANIMALS; MOLECULAR-DYNAMICS; HYDROSTATIC-PRESSURE; STAPHYLOCOCCAL NUCLEASE; STRUCTURAL TRANSITION; ORGANIC OSMOLYTES; ELEVATED LEVELS; X-RAY; UREA;
D O I
10.1063/1.4748101
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
To understand the mechanism of protein protection by the osmolyte trimethylamine-N-oxide (TMAO) at high pressure, using molecular dynamics (MD) simulations, solvation of hydrophobic group is probed in aqueous solutions of TMAO over a wide range of pressures relevant to protein denaturation. The hydrophobic solute considered in this study is neopentane which is a considerably large molecule. The concentrations of TMAO range from 0 to 4 M and for each TMAO concentration, simulations are performed at five different pressures ranging from 1 atm to 8000 atm. Potentials of mean force are calculated and the relative stability of solvent-separated state over the associated state of hydrophobic solute are estimated. Results suggest that high pressure reduces association of hydrophobic solutes. From computations of site-site radial distribution function followed by analysis of coordination number, it is found that water molecules are tightly packed around the nonpolar particle at high pressure and the hydration number increases with increasing pressure. On the other hand, neopentane interacts preferentially with TMAO over water and although hydration of neopentane reduces in presence of this osmolyte, TMAO does not show any tendency to prevent the pressure-induced dispersion of neopentane moieties. It is also observed that TMAO molecules prefer a side-on orientation near the neopentane surface, allowing its oxygen atom to form favorable hydrogen bonds with water while maintaining some hydrophobic contacts with neopentane. Analysis of hydrogen-bond properties and solvation characteristics of TMAO reveals that TMAO can form hydrogen bonds with water and it reduces the identical nearest neighbor water molecules caused by high hydrostatic pressures. Moreover, TMAO enhances life-time of water-water hydrogen bonds and makes these hydrogen bonds more attractive. Implication of these results for counteracting effect of TMAO against protein denaturation at high pressures are discussed. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4748101]
引用
收藏
页数:11
相关论文
共 50 条
  • [41] Cosolvent Exclusion Drives Protein Stability in Trimethylamine N-Oxide and Betaine Solutions
    Ganguly, Pritam
    Bubak, Dominik
    Polak, Jakub
    Fagan, Patrik
    Dracinsky, Martin
    van der Vegt, Nico F. A.
    Heyda, Jan
    Shea, Joan-Emma
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2022, 13 (34) : 7980 - 7986
  • [42] Thermodynamics of the interactions of a homologous series of some amino acids with trimethylamine N-oxide: Volumetric, compressibility, and calorimetric studies
    Choudhary, Sinjan
    Kishore, Nand
    [J]. JOURNAL OF CHEMICAL THERMODYNAMICS, 2011, 43 (10) : 1541 - 1551
  • [43] The osmolyte trimethylamine-N-oxide stabilizes the Fyn SH3 domain without altering the structure of its folding transition state
    Lin, Sung Lun
    Zarrine-Afsar, Arash
    Davidson, Alan R.
    [J]. PROTEIN SCIENCE, 2009, 18 (03) : 526 - 536
  • [44] Counteracting Effects of Trimethylamine N-Oxide against Urea in Aqueous Solutions: Insights from Theoretical Two-Dimensional Infrared Spectroscopy
    Malik, Ravi
    Chandra, Amalendu
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2023, 127 (33) : 7372 - 7383
  • [45] Counteracting effects of trimethylamine N-oxide and betaine on the interactions of urea with zwitterionic glycine peptides
    Venkatesu, Pannur
    Lin, Ho-mu
    Lee, Ming-Jer
    [J]. THERMOCHIMICA ACTA, 2009, 491 (1-2) : 20 - 28
  • [46] Contribution of trimethylamine N-oxide on the growth and pressure tolerance of deep-sea bacteria
    Yin Qunjian
    Zhang Weijia
    Li Xuegong
    Zhou Lihong
    Qi Xiaoqing
    Zhang Chan
    Wu Long-Fei
    [J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY, 2019, 37 (01) : 210 - 222
  • [47] How Do Urea and Trimethylamine N-Oxide Influence the Dehydration-Induced Phase Transition of a Lipid Membrane?
    Maiti, Archita
    Daschakraborty, Snehasis
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2021, 125 (36) : 10149 - 10165
  • [48] Microscopic insights into the protein-stabilizing effect of trimethylamine N-oxide (TMAO)
    Ma, Jianqiang
    Pazos, Ileana M.
    Gai, Feng
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (23) : 8476 - 8481
  • [49] Tuning the Hydrophobic Interaction: Ultrafast Optical Kerr Effect Study of Aqueous lonene Solutions
    Palombo, Francesca
    Heisler, Ismael A.
    Hribar-Lee, Barbara
    Meech, Stephen R.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (29) : 8900 - 8908
  • [50] Presence of Hydrophobic Groups May Modify the Specific Ion Effect in Aqueous Polyelectrolyte Solutions
    Cebasek, S.
    Serucnik, M.
    Vlachy, Vojko
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (13) : 3682 - 3688