DiSCuS: An Open Platform for (Not Only) Virtual Screening Results Management

被引:5
作者
Wojcikowski, Maciej [1 ]
Zielenkiewicz, Piotr [1 ,2 ]
Siedlecki, Pawel [1 ,2 ]
机构
[1] Polish Acad Sci, Inst Biochem & Biophys, PL-02106 Warsaw, Poland
[2] Univ Warsaw, Inst Expt Plant Biol & Biotechnol, Dept Plant Mol Biol, PL-02096 Warsaw, Poland
关键词
EMPIRICAL SCORING FUNCTIONS; GENETIC ALGORITHM; BINDING-AFFINITY; DOCKING PROGRAMS; ACCURATE DOCKING; FORCE-FIELD; LIGAND; GLIDE; PERFORMANCE; VALIDATION;
D O I
10.1021/ci400587f
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
DiSCuS, a "Database System for Compound Selection", has been developed. The primary goal of DiSCuS is to aid researchers in the steps subsequent to generating high-throughput virtual screening (HTVS) results, such as selection of compounds for further study, purchase, or synthesis. To do so, DiSCuS provides (1) a storage facility for ligand receptor complexes (generated with external programs), (2) a number of tools for validating these complexes, such as scoring functions, potential energy contributions, and med-chem features with ligand similarity estimates, and (3) powerful searching and filtering options with logical operators. DiSCuS supports multiple receptor targets for a single ligand, so it can be used either to evaluate different variants of an active site or for selectivity studies. instructions, and source code can be found at http://discus.ibb.waw.pl.
引用
收藏
页码:347 / 354
页数:8
相关论文
共 50 条
  • [1] Approaches to solving the rigid receptor problem by identifying a minimal set of flexible residues during ligand docking
    Anderson, AC
    O'Neil, RH
    Surti, TS
    Stroud, RM
    [J]. CHEMISTRY & BIOLOGY, 2001, 8 (05): : 445 - 457
  • [2] [Anonymous], MOL OP ENV MOE
  • [3] [Anonymous], 2010, The PyMOL Molecular Graphics System, Version 1.2r3pre
  • [4] Ligand binding affinities from MD simulations
    Åqvist, J
    Luzhkov, VB
    Brandsdal, BO
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2002, 35 (06) : 358 - 365
  • [5] Berthold M. R., 2008, COMPUTER LONG BEACH, V11, P26
  • [6] UniChem: a unified chemical structure cross-referencing and identifier tracking system
    Chambers, Jon
    Davies, Mark
    Gaulton, Anna
    Hersey, Anne
    Velankar, Sameer
    Petryszak, Robert
    Hastings, Janna
    Bellis, Louisa
    McGlinchey, Shaun
    Overington, John P.
    [J]. JOURNAL OF CHEMINFORMATICS, 2013, 5
  • [7] VSDMIP 1.5: an automated structure- and ligand-based virtual screening platform with a PyMOL graphical user interface
    Cortes Cabrera, Alvaro
    Gil-Redondo, Ruben
    Perona, Almudena
    Gago, Federico
    Morreale, Antonio
    [J]. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2011, 25 (09) : 813 - 824
  • [8] Comparison of Several Molecular Docking Programs: Pose Prediction and Virtual Screening Accuracy
    Cross, Jason B.
    Thompson, David C.
    Rai, Brajesh K.
    Baber, J. Christian
    Fan, Kristi Yi
    Hu, Yongbo
    Humblet, Christine
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2009, 49 (06) : 1455 - 1474
  • [9] Comparison of automated docking programs as virtual screening tools
    Cummings, MD
    DesJarlais, RL
    Gibbs, AC
    Mohan, V
    Jaeger, EP
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (04) : 962 - 976
  • [10] Structural interaction fingerprint (SIFt): A novel method for analyzing three-dimensional protein-ligand binding interactions
    Deng, Z
    Chuaqui, C
    Singh, J
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (02) : 337 - 344