Nα-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain

被引:56
作者
Yang, Dongxue [1 ,2 ]
Fang, Qianglin [1 ,2 ]
Wang, Mingzhu [1 ]
Ren, Ren [1 ]
Wang, Hong [1 ,2 ]
He, Meng [1 ]
Sun, Youwei [1 ]
Yang, Na [1 ]
Xu, Rui-Ming [1 ]
机构
[1] Chinese Acad Sci, Inst Biophys, Natl Lab Biomacromol, Beijing 100080, Peoples R China
[2] Univ Chinese Acad Sci, Beijing, Peoples R China
关键词
STRUCTURAL BASIS; SACCHAROMYCES-CEREVISIAE; RECOGNITION COMPLEX; SILENCED CHROMATIN; YEAST; CONSERVATION; TERMINUS; ORC1P;
D O I
10.1038/nsmb.2637
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In Saccharomyces cerevisiae, acetylation of the Sir3 N terminus is important for transcriptional silencing. This covalent modification promotes the binding of the Sir3 BAH domain to the nucleosome, but a mechanistic understanding of this phenomenon is lacking. By X-ray crystallography, we show here that the acetylated N terminus of Sir3 does not interact with the nucleosome directly. Instead, it stabilizes a nucleosome-binding loop in the BAH domain.
引用
收藏
页码:1116 / +
页数:4
相关论文
共 26 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]   Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 Å Resolution [J].
Armache, Karim-Jean ;
Garlick, Joseph D. ;
Canzio, Daniele ;
Narlikar, Geeta J. ;
Kingston, Robert E. .
SCIENCE, 2011, 334 (6058) :977-982
[3]   Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans [J].
Arnesen, Thomas ;
Van Damme, Petra ;
Polevoda, Bogdan ;
Helsens, Kenny ;
Evjenth, Rune ;
Colaert, Niklaas ;
Varhaug, Jan Erik ;
Vandekerckhove, Joel ;
Lillehaug, Johan R. ;
Sherman, Fred ;
Gevaert, Kris .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (20) :8157-8162
[4]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[5]   THE MULTIDOMAIN STRUCTURE OF ORC1P REVEALS SIMILARITY TO REGULATORS OF DNA-REPLICATION AND TRANSCRIPTIONAL SILENCING [J].
BELL, SP ;
MITCHELL, J ;
LEBER, J ;
KOBAYASHI, R ;
STILLMAN, B .
CELL, 1995, 83 (04) :563-568
[6]   Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain [J].
Connelly, JJ ;
Yuan, PH ;
Hsu, HC ;
Li, ZZ ;
Xu, RM ;
Sternglanz, R .
MOLECULAR AND CELLULAR BIOLOGY, 2006, 26 (08) :3256-3265
[7]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[8]   Functional characterization of the N terminus of Sir3p [J].
Gotta, M ;
Palladino, F ;
Gasser, SM .
MOLECULAR AND CELLULAR BIOLOGY, 1998, 18 (10) :6110-6120
[9]   Spreading of transcriptional repressor SIR3 from telomeric heterochromatin [J].
Hecht, A ;
StrahlBolsinger, S ;
Grunstein, M .
NATURE, 1996, 383 (6595) :92-96
[10]   Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation [J].
Hoppe, GJ ;
Tanny, JC ;
Rudner, AD ;
Gerber, SA ;
Danaie, S ;
Gygi, SP ;
Moazed, D .
MOLECULAR AND CELLULAR BIOLOGY, 2002, 22 (12) :4167-4180