Light-mediated control of DNA transcription in yeast

被引:65
作者
Hughes, Robert M. [1 ]
Bolger, Steven [2 ]
Tapadia, Hersh [2 ]
Tucker, Chandra L. [1 ,3 ]
机构
[1] Duke Univ, Dept Biol, Durham, NC USA
[2] Duke Univ, Dept Biomed Engn, Durham, NC 27706 USA
[3] Univ Colorado Denver, Dept Pharmacol, Aurora, CO 80045 USA
基金
美国国家卫生研究院;
关键词
Photoreceptor; Cryptochrome; Phytochrome; Optogenetics; Two-hybrid; DNA transcription; PROTEIN-PROTEIN INTERACTIONS; SACCHAROMYCES-CEREVISIAE; GENE-EXPRESSION; GRATUITOUS INDUCTION; NUCLEOTIDE-SEQUENCE; MAMMALIAN-CELLS; PROMOTER SYSTEM; MET25; GENE; BINDING; GAL4-VP16;
D O I
10.1016/j.ymeth.2012.08.004
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A variety of methods exist for inducible control of DNA transcription in yeast. These include the use of native yeast promoters or regulatory elements that are responsive to small molecules such as galactose, methionine, and copper, or engineered systems that allow regulation by orthogonal small molecules such as estrogen. While chemically regulated systems are easy to use and can yield high levels of protein expression, they often provide imprecise control over protein levels. Moreover, chemically regulated systems can affect many other proteins and pathways in yeast, activating signaling pathways or physiological responses. Here, we describe several methods for light mediated control of DNA transcription in vivo in yeast. We describe methodology for using a red light and phytochrome dependent system to induce transcription of genes under GAL1 promoter control, as well as blue light/cryptochrome dependent systems to control transcription of genes under GAL1 promoter or LexA operator control. Light is dose dependent, inexpensive to apply, easily delivered, and does not interfere with cellular pathways, and thus has significant advantages over chemical systems. (c) 2012 Elsevier Inc. All rights reserved.
引用
收藏
页码:385 / 391
页数:7
相关论文
共 50 条
  • [31] Transcription Regulation of a Yeast Gene from a Downstream Location
    Shetty, Ameet
    Swaminathan, Aishwarya
    Lopes, John M.
    JOURNAL OF MOLECULAR BIOLOGY, 2013, 425 (03) : 457 - 465
  • [32] PIF1 and RVE1 form a transcriptional feedback loop to control light-mediated seed germination in Arabidopsis
    Yang, Liwen
    Jiang, Zhimin
    Jing, Yanjun
    Lin, Rongcheng
    JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2020, 62 (09) : 1372 - 1384
  • [33] Synthetic far-red light-mediated CRISPR-dCas9 device for inducing functional neuronal differentiation
    Shao, Jiawei
    Wang, Meiyan
    Yu, Guiling
    Zhu, Sucheng
    Yu, Yuanhuan
    Heng, Boon Chin
    Wu, Jiali
    Ye, Haifeng
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (29) : E6722 - E6730
  • [35] BBX11 promotes red light-mediated photomorphogenic development by modulating phyB-PIF4 signaling
    Song, Zhaoqing
    Heng, Yueqin
    Bian, Yeting
    Xiao, Yuntao
    Liu, Jiujie
    Zhao, Xianhai
    Jiang, Yan
    Deng, Xing Wang
    Xu, Dongqing
    ABIOTECH, 2021, 2 (02) : 117 - 130
  • [36] DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1
    Santopolo, Silvia
    Boccaccini, Alessandra
    Lorrai, Riccardo
    Ruta, Veronica
    Capauto, Davide
    Minutello, Emanuele
    Serino, Giovanna
    Costantino, Paolo
    Vittorioso, Paola
    BMC PLANT BIOLOGY, 2015, 15
  • [37] HY5: a key regulator for light-mediated nutrient uptake and utilization by plants
    Mankotia, Samriti
    Jakhar, Pooja
    Satbhai, Santosh B.
    NEW PHYTOLOGIST, 2024, 241 (05) : 1929 - 1935
  • [38] Reconstitution of phytochrome A-mediated light modulation of the ABA signaling pathways in yeast
    Li, Hong
    Zhou, Yangyang
    Qin, Xinyan
    Peng, Jing
    Han, Run
    Lv, Yang
    Li, Cong
    Qi, Lijuan
    Qu, Gao- Ping
    Yang, Li
    Li, Yanjie
    Terzaghi, William
    Li, Zhen
    Qin, Feng
    Gong, Zhizhong
    Deng, Xing Wang
    Li, Jigang
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2023, 120 (34)
  • [39] Light-mediated self-organization of sunflower stands increases oil yield in the field
    Lopez Pereira, Monica
    Sadras, Victor O.
    Batista, William
    Casal, Jorge J.
    Hall, Antonio J.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (30) : 7975 - 7980
  • [40] A homeodomain transcription factor regulates the DNA replication checkpoint in yeast
    Purtill, Frances S.
    Whitehall, Simon K.
    Williams, Emma S.
    McInerny, Christopher J.
    Sharrocks, Andrew D.
    Morgan, Brian A.
    CELL CYCLE, 2011, 10 (04) : 664 - 670