Computer-Based Technologies for Virtual Screening and Analysis of Chemical Compounds Promising for Anti-HIV-1 Drug Design

被引:0
|
作者
Andrianov, A. M. [1 ]
Kashyn, I. A. [1 ,2 ]
Tuzikov, A. V. [2 ]
机构
[1] Inst Bioorgan Chem NASB, 5-2 Acad Kuprevich St, Minsk 220141, BELARUS
[2] United Inst Informat Problems NASB, 6 Surganov St, Minsk 220012, BELARUS
来源
PATTERN RECOGNITION AND INFORMATION PROCESSING | 2017年 / 673卷
关键词
Virtual screening; Molecular docking; Molecular dynamics; Binding free energy calculations; HIV-1 entry inhibitors; Broadly neutralizing antibodies; NEUTRALIZING ANTIBODIES; POTENT NEUTRALIZATION; HIV-1; DISCOVERY; BROAD; INHIBITORS; GP120;
D O I
10.1007/978-3-319-54220-1_2
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Computer-based technologies for in silico drug development comprising virtual screening, high-throughput docking, molecular dynamics simulations, and binding free energy calculations are presented. The efficiency of these technologies is demonstrated by the identification of novel potential anti-HIV-1 agents able to mimic pharmacophoric properties of potent and broad neutralizing antibodies 10e8, VRC01, and 3074 that target three different functionally conserved regions of the viral envelope proteins.
引用
收藏
页码:14 / 23
页数:10
相关论文
共 49 条
  • [31] Tomocomd-Cardd, a novel approach for computer-aided ‘ rational’ drug design: I. Theoretical and experimental assessment of a promising method for computational screening and in silico design of new anthelmintic compounds
    Yovani Marrero-Ponce
    Juan A. Castillo-Garit
    Ervelio Olazabal
    Hector S. Serrano
    Alcidez Morales
    Nilo Castañedo
    Froylán Ibarra-Velarde
    Alma Huesca-Guillen
    Elisa Jorge
    Arletys del Valle
    Francisco Torrens
    Eduardo A. Castro
    Journal of Computer-Aided Molecular Design, 2004, 18 : 615 - 634
  • [32] TOMOCOMD-CARDD, a novel approach for computer-aided 'rational' drug design:: I.: Theoretical and experimental assessment of a promising method for computational screening and in silico design of new anthelmintic compounds
    Marrero-Ponce, Y
    Castillo-Garit, JA
    Olazabal, E
    Serrano, HS
    Morales, A
    Castañedo, N
    Ibarra-Velarde, F
    Huesca-Guillen, A
    Jorge, E
    del Valle, A
    Torrens, F
    Castro, EA
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2004, 18 (10) : 615 - 634
  • [33] Putative Anti-Cancer Drug Candidate Targeting the 'PLK-1-Polo-Box Domain' by High Throughput Virtual Screening: A Computational Drug Design Study
    Shakil, Shazi
    Abuzinadah, Mohammed F.
    CRITICAL REVIEWS IN EUKARYOTIC GENE EXPRESSION, 2019, 29 (03): : 251 - 261
  • [34] Computer-Aided Perspective for the Design of Flexible HIV Non-Nucleoside Reverse Transcriptase Inhibitors (NNRTIs): de-novo Drug Design, Virtual Screening and Molecular Dynamics Simulations
    Moonsamy, Suri
    Soliman, Mahmoud E. S.
    LETTERS IN DRUG DESIGN & DISCOVERY, 2014, 11 (04) : 513 - 524
  • [35] Target-based virtual screening, computational multiscoring docking and molecular dynamics simulation of small molecules as promising drug candidate affecting kinesin-like protein KIFC1
    Khan, Mohammad Kalim Ahmad
    Ahmad, Saheem
    Rabbani, Gulam
    Shahab, Uzma
    Khan, Mohd Shahnawaz
    CELL BIOCHEMISTRY AND FUNCTION, 2022, 40 (05) : 451 - 472
  • [36] Rational design of PIN1 inhibitors for cancer treatment based on conformational diversity analysis and docking based virtual screening
    Maggio, Julian
    Cabrera, Maia
    Armando, Romina
    Chinestrad, Patricio
    Pifano, Marina
    Menna, Pablo Lorenzano
    Gomez, Daniel E.
    Gomez, Diego L. Mengual
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (13) : 5858 - 5867
  • [37] Discovery of Novel Promising Targets for Anti-AIDS Drug Developments by Computer Modeling: Application to the HIV-1 gp120 V3 Loop
    Andrianov, Alexander M.
    Anishchenko, Ivan V.
    Tuzikov, Alexander V.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2011, 51 (10) : 2760 - 2767
  • [38] Structure-based drug design, synthesis and screening of MmaA1 inhibitors as novel anti-TB agents
    Hymavathi Veeravarapu
    Vasavi Malkhed
    Kiran Kumar Mustyala
    Rajender Vadija
    Ramesh Malikanti
    Uma Vuruputuri
    Murali Krishna Kumar Muthyala
    Molecular Diversity, 2021, 25 : 351 - 366
  • [39] Structure-based drug design, synthesis and screening of MmaA1 inhibitors as novel anti-TB agents
    Veeravarapu, Hymavathi
    Malkhed, Vasavi
    Mustyala, Kiran Kumar
    Vadija, Rajender
    Malikanti, Ramesh
    Vuruputuri, Uma
    Muthyala, Murali Krishna Kumar
    MOLECULAR DIVERSITY, 2021, 25 (01) : 351 - 366
  • [40] P1 and P1′ para-fluoro phenyl groups show enhanced binding and favorable predicted pharmacological properties: Structure-based virtual screening of extended lopinavir analogs against multi-drug resistant HIV-1 protease
    Yedidi, Ravikiran S.
    Liu, Zhigang
    Kovari, Iulia A.
    Woster, Patrick M.
    Kovari, Ladislau C.
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2014, 47 : 18 - 24