Multichannel bacterial discrimination based on recognition and disintegration disparity of short antimicrobial peptides

被引:7
作者
Qi, Peng [1 ,2 ,3 ]
Wang, Yingwen [1 ,2 ,3 ,4 ]
Zhang, Dun [1 ,2 ,3 ]
Sun, Yan [1 ,2 ,3 ]
Zheng, Laibao [1 ,2 ,3 ,4 ]
机构
[1] Chinese Acad Sci, Inst Oceanol, Key Lab Marine Environm Corros & Biofouling, Qingdao 266071, Peoples R China
[2] Qingdao Natl Lab Marine Sci & Technol, Open Studio Marine Corros & Protect, 1 Wenhai Rd, Qingdao 266237, Peoples R China
[3] Chinese Acad Sci, Ctr Ocean Megasci, 7 Nanhai Rd, Qingdao 266071, Peoples R China
[4] Univ Chinese Acad Sci, Beijing 100039, Peoples R China
基金
中国国家自然科学基金;
关键词
Bacterial discrimination; Short antimicrobial peptides; Recognition; Disintegration; Linear discriminant analysis; ESCHERICHIA-COLI; INFRARED-SPECTROSCOPY; PATHOGENIC BACTERIA; IDENTIFICATION; TRYPTOPHAN; DESIGN; SENSOR;
D O I
10.1016/j.ab.2020.113764
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this paper, we present a facile and rapid multichannel approach for the simultaneous detection and discrimination of multiple bacterial species. The proposed assay employed four short antimicrobial peptides (SAMPs) for recognition due to their disparity in antibacterial activity against different bacterial strains, and utilized fluorescence measurements to explicate the bacterial recognition and disintegration disparity of the SAMPs. Then, linear discriminant analysis (LDA) was used to effectively discriminate and classify the observed characteristic fluorescence patterns of SAMPs towards target bacteria, exhibiting excellent bacterial discrimination and classification accuracy. This is the first report on the use of SAMPs as recognition units for simultaneous multiple bacterial detection and discrimination. The presented approach was simple, fast, highly repeatable, and required no labelling processes. According to the corresponding LDA discriminant results, six different target bacterial species could be effectively identified and discriminated within 30 min.
引用
收藏
页数:7
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共 35 条
  • [1] Temporin-SHf, a New Type of Phe-rich and Hydrophobic Ultrashort Antimicrobial Peptide
    Abbassi, Feten
    Lequin, Olivier
    Piesse, Christophe
    Goasdoue, Nicole
    Foulon, Thierry
    Nicolas, Pierre
    Ladram, Ali
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (22) : 16880 - 16892
  • [2] Antimicrobial peptides: Pore formers or metabolic inhibitors in bacteria?
    Brogden, KA
    [J]. NATURE REVIEWS MICROBIOLOGY, 2005, 3 (03) : 238 - 250
  • [3] Tryptophan- and arginine-rich antimicrobial peptides: Structures and mechanisms of action
    Chan, David I.
    Prenner, Elmar J.
    Vogel, Hans J.
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2006, 1758 (09): : 1184 - 1202
  • [4] Rapid Bacterial Identification, Resistance, Virulence and Type Profiling using Selected Reaction Monitoring Mass Spectrometry
    Charretier, Yannick
    Dauwalder, Olivier
    Franceschi, Christine
    Degout-Charmette, Elodie
    Zambardi, Gilles
    Cecchini, Tiphaine
    Bardet, Chloe
    Lacoux, Xavier
    Dufour, Philippe
    Veron, Laurent
    Rostaing, Herve
    Lanet, Veronique
    Fortin, Tanguy
    Beaulieu, Corinne
    Perrot, Nadine
    Dechaume, Dominique
    Pons, Sylvie
    Girard, Victoria
    Salvador, Arnaud
    Durand, Geraldine
    Mallard, Frederic
    Theretz, Alain
    Broyer, Patrick
    Chatellier, Sonia
    Gervasi, Gaspard
    Van Nuenen, Marc
    Roitsch, Carolyn Ann
    Van Belkum, Alex
    Lemoine, Jerome
    Vandenesch, Francois
    Charrier, Jean-Philippe
    [J]. SCIENTIFIC REPORTS, 2015, 5
  • [5] Integrating recognition elements with nanomaterials for bacteria sensing
    Chen, Juhong
    Andler, Stephanie M.
    Goddard, Julie M.
    Nugen, Sam R.
    Rotello, Vincent M.
    [J]. CHEMICAL SOCIETY REVIEWS, 2017, 46 (05) : 1272 - 1283
  • [6] Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases
    Clarridge, JE
    [J]. CLINICAL MICROBIOLOGY REVIEWS, 2004, 17 (04) : 840 - +
  • [7] Antimicrobial Peptides: Insights into Membrane Permeabilization, Lipopolysaccharide Fragmentation and Application in Plant Disease Control
    Datta, Aritreyee
    Ghosh, Anirban
    Airoldi, Cristina
    Sperandeo, Paola
    Mroue, Kamal H.
    Jimenez-Barbero, Jesus
    Kundu, Pallob
    Ramamoorthy, Ayyalusamy
    Bhunia, Anirban
    [J]. SCIENTIFIC REPORTS, 2015, 5
  • [8] Diet rapidly and reproducibly alters the human gut microbiome
    David, Lawrence A.
    Maurice, Corinne F.
    Carmody, Rachel N.
    Gootenberg, David B.
    Button, Julie E.
    Wolfe, Benjamin E.
    Ling, Alisha V.
    Devlin, A. Sloan
    Varma, Yug
    Fischbach, Michael A.
    Biddinger, Sudha B.
    Dutton, Rachel J.
    Turnbaugh, Peter J.
    [J]. NATURE, 2014, 505 (7484) : 559 - +
  • [9] Quick Discrimination of Heavy Metal Resistant Bacterial Populations Using Infrared Spectroscopy Coupled with Chemometrics
    Gurbanov, Rafig
    Ozek, Nihal Simsek
    Gozen, Ayse Gul
    Severcan, Feride
    [J]. ANALYTICAL CHEMISTRY, 2015, 87 (19) : 9653 - 9661
  • [10] Rapid Discrimination of Bacteria by Paper Spray Mass Spectrometry
    Hamid, Ahmed M.
    Jarmusch, Alan K.
    Pirro, Valentina
    Pincus, David H.
    Clay, Bradford G.
    Gervasi, Gaspard
    Cooks, R. Graham
    [J]. ANALYTICAL CHEMISTRY, 2014, 86 (15) : 7500 - 7507