Diffusion of multiple species with excluded-volume effects

被引:59
作者
Bruna, Maria [1 ]
Chapman, S. Jonathan [1 ]
机构
[1] Univ Oxford, Inst Math, Oxford OX1 3LB, England
基金
英国工程与自然科学研究理事会;
关键词
ANOMALOUS DIFFUSION; CROSS-DIFFUSION; SELF-DIFFUSION; RECOVERY; MOTION;
D O I
10.1063/1.4767058
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Stochastic models of diffusion with excluded-volume effects are used to model many biological and physical systems at a discrete level. The average properties of the population may be described by a continuum model based on partial differential equations. In this paper we consider multiple interacting subpopulations/species and study how the inter-species competition emerges at the population level. Each individual is described as a finite-size hard core interacting particle undergoing Brownian motion. The link between the discrete stochastic equations of motion and the continuum model is considered systematically using the method of matched asymptotic expansions. The system for two species leads to a nonlinear cross-diffusion system for each subpopulation, which captures the enhancement of the effective diffusion rate due to excluded-volume interactions between particles of the same species, and the diminishment due to particles of the other species. This model can explain two alternative notions of the diffusion coefficient that are often confounded, namely collective diffusion and self-diffusion. Simulations of the discrete system show good agreement with the analytic results. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4767058]
引用
收藏
页数:16
相关论文
共 48 条
[1]   CORRELATIONS FOR DILUTE HARD-CORE SUSPENSIONS [J].
ACKERSON, BJ ;
FLEISHMAN, L .
JOURNAL OF CHEMICAL PHYSICS, 1982, 76 (05) :2675-2679
[2]  
[Anonymous], MULTIAGENT SYSTEMS A
[3]   MOBILITY MEASUREMENT BY ANALYSIS OF FLUORESCENCE PHOTOBLEACHING RECOVERY KINETICS [J].
AXELROD, D ;
KOPPEL, DE ;
SCHLESSINGER, J ;
ELSON, E ;
WEBB, WW .
BIOPHYSICAL JOURNAL, 1976, 16 (09) :1055-1069
[4]   Models of collective cell motion for cell populations with different aspect ratio: Diffusion, proliferation and travelling waves [J].
Baker, Ruth E. ;
Simpson, Matthew J. .
PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2012, 391 (14) :3729-3750
[5]   SELF-DIFFUSION OF SPHERES IN A CONCENTRATED SUSPENSION [J].
BEENAKKER, CWJ ;
MAZUR, P .
PHYSICA A, 1983, 120 (03) :388-410
[6]   Analyzing the components of the free-energy landscape in a calcium selective ion channel by Widom's particle insertion method [J].
Boda, Dezso ;
Giri, Janhavi ;
Henderson, Douglas ;
Eisenberg, Bob ;
Gillespie, Dirk .
JOURNAL OF CHEMICAL PHYSICS, 2011, 134 (05)
[7]   A reaction-diffusion model to study RNA motion by quantitative fluorescence recovery after photobleaching [J].
Braga, Jose ;
McNally, James G. ;
Carmo-Fonseca, Maria .
BIOPHYSICAL JOURNAL, 2007, 92 (08) :2694-2703
[8]   Excluded-volume effects in the diffusion of hard spheres [J].
Bruna, Maria ;
Chapman, S. Jonathan .
PHYSICAL REVIEW E, 2012, 85 (01)
[9]   NONLINEAR CROSS-DIFFUSION WITH SIZE EXCLUSION [J].
Burger, Martin ;
Di Francesco, Marco ;
Pietschmann, Jan-Frederik ;
Schlake, Baebel .
SIAM JOURNAL ON MATHEMATICAL ANALYSIS, 2010, 42 (06) :2842-2871
[10]   Diffusion coefficients for the ternary system water plus chloroform plus acetic acid at 25°C [J].
Buzatu, Daniela ;
Buzatu, Florin D. ;
Paduano, Luigi ;
Sartorio, Roberto .
JOURNAL OF SOLUTION CHEMISTRY, 2007, 36 (11-12) :1373-1384