bioDBnet: the biological database network

被引：268

作者：

Mudunuri, Uma ^{[1
]}

Che, Anney ^{[1
]}

Yi, Ming ^{[1
]}

Stephens, Robert M. ^{[1
]}

机构：

[1] SAIC Frederick Inc, Adv Technol Program, Adv Biomed Comp Ctr, NCI, Frederick, MD 21702 USA

来源：

BIOINFORMATICS | 2009年 / 25卷 / 04期

基金：

美国国家卫生研究院;

关键词：

GENOME BROWSER; BIOINFORMATICS; WAREHOUSE; SYSTEM;

D O I：

10.1093/bioinformatics/btn654

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

bioDBnet is an online web resource that provides interconnected access to many types of biological databases. It has integrated many of the most commonly used biological databases and in its current state has 153 database identifiers (nodes) covering all aspects of biology including genes, proteins, pathways and other biological concepts. bioDBnet offers various ways to work with these databases including conversions, extensive database reports, custom navigation and has various tools to enhance the quality of the results. Importantly, the access to bioDBnet is updated regularly, providing access to the most recent releases of each individual database.

引用

页码：555 / 556

页数：2

共 8 条

[1] BIOZON: a hub of heterogeneous biological data [J].

Birkland, Aaron ;

Yona, Golan .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D235-D242

[2]

DO HH, 2004, P ADV DAT TECHN HER

[3]

Etzold T, 1996, METHOD ENZYMOL, V266, P114

[4] The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists [J].

Huang, Da Wei ;

Sherman, Brad T. ;

Tan, Qina ;

Collins, Jack R. ;

Alvord, W. Gregory ;

Roayaei, Jean ;

Stephens, Robert ;

Baseler, Michael W. ;

Lane, H. Clifford ;

Lempicki, Richard A. .

GENOME BIOLOGY, 2007, 8 (09)

[5] The human genome browser at UCSC [J].

Kent, WJ ;

Sugnet, CW ;

Furey, TS ;

Roskin, KM ;

Pringle, TH ;

Zahler, AM ;

Haussler, D .

GENOME RESEARCH, 2002, 12 (06) :996-1006

[6] BioWarehouse: a bioinformatics database warehouse toolkit [J].

Lee, TJ ;

Pouliot, Y ;

Wagner, V ;

Gupta, P ;

Stringer-Calvert, DWJ ;

Tenenbaum, JD ;

Karp, PD .

BMC BIOINFORMATICS, 2006, 7 (1)

[7] Atlas - a data warehouse for integrative bioinformatics [J].

Shah, SP ;

Huang, Y ;

Xu, T ;

Yuen, MMS ;

Ling, J ;

Ouellette, BFF .

BMC BIOINFORMATICS, 2005, 6 (1)

[8] The Generic Genome Browser: A building block for a model organism system database [J].

Stein, LD ;

Mungall, C ;

Shu, SQ ;

Caudy, M ;

Mangone, M ;

Day, A ;

Nickerson, E ;

Stajich, JE ;

Harris, TW ;

Arva, A ;

Lewis, S .

GENOME RESEARCH, 2002, 12 (10) :1599-1610

← 1 →