Uncertainty-aware performance assessment of optical imaging modalities with invertible neural networks

被引:19
作者
Adler, Tim J. [1 ,2 ]
Ardizzone, Lynton [3 ]
Vemuri, Anant [1 ]
Ayala, Leonardo [1 ]
Groehl, Janek [1 ,4 ]
Kirchner, Thomas [1 ,5 ]
Wirkert, Sebastian [1 ]
Kruse, Jakob [3 ]
Rother, Carsten [3 ]
Koethe, Ullrich [3 ]
Maier-Hein, Lena [1 ]
机构
[1] Deutsch Krebsforschungszentrum, Comp Assisted Med Intervent, Neuenheimer Feld 223, D-69120 Heidelberg, Germany
[2] Heidelberg Univ, Fac Math & Comp Sci, Heidelberg, Germany
[3] Heidelberg Univ, Visual Learning Lab, Heidelberg, Germany
[4] Heidelberg Univ, Med Fac, Heidelberg, Germany
[5] Heidelberg Univ, Fac Phys & Astron, Heidelberg, Germany
基金
欧盟地平线“2020”;
关键词
Surgical data science; Multispectral imaging; Optical imaging; Error analysis; Ambiguity; Uncertainty estimation; Deep learning; Invertible neural networks; LIGHT TRANSPORT; MONTE-CARLO;
D O I
10.1007/s11548-019-01939-9
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
PurposeOptical imaging is evolving as a key technique for advanced sensing in the operating room. Recent research has shown that machine learning algorithms can be used to address the inverse problem of converting pixel-wise multispectral reflectance measurements to underlying tissue parameters, such as oxygenation. Assessment of the specific hardware used in conjunction with such algorithms, however, has not properly addressed the possibility that the problem may be ill-posed.MethodsWe present a novel approach to the assessment of optical imaging modalities, which is sensitive to the different types of uncertainties that may occur when inferring tissue parameters. Based on the concept of invertible neural networks, our framework goes beyond point estimates and maps each multispectral measurement to a full posterior probability distribution which is capable of representing ambiguity in the solution via multiple modes. Performance metrics for a hardware setup can then be computed from the characteristics of the posteriors.ResultsApplication of the assessment framework to the specific use case of camera selection for physiological parameter estimation yields the following insights: (1) estimation of tissue oxygenation from multispectral images is a well-posed problem, while (2) blood volume fraction may not be recovered without ambiguity. (3) In general, ambiguity may be reduced by increasing the number of spectral bands in the camera.ConclusionOur method could help to optimize optical camera design in an application-specific manner.
引用
收藏
页码:997 / 1007
页数:11
相关论文
共 31 条
[11]  
Gal Y, 2016, PR MACH LEARN RES, V48
[12]  
Gretton A, 2012, J MACH LEARN RES, V13, P723
[13]   Image enhancement based on in vivo hyperspectral gastroscopic images: a case study [J].
Gu, Xiaozhou ;
Han, Zhimin ;
Yao, Liqing ;
Zhong, Yunshi ;
Shi, Qiang ;
Fu, Ye ;
Liu, Changsheng ;
Wang, Xiguang ;
Xie, Tianyu .
JOURNAL OF BIOMEDICAL OPTICS, 2016, 21 (10)
[14]   Optical properties of biological tissues: a review [J].
Jacques, Steven L. .
PHYSICS IN MEDICINE AND BIOLOGY, 2013, 58 (11) :R37-R61
[15]   Hypoxia Imaging Endoscopy Equipped with Laser Light Source from Preclinical Live Animal Study to First-In-Human Subject Research [J].
Kaneko, Kazuhiro ;
Yamaguchi, Hiroshi ;
Saito, Takaaki ;
Yano, Tomonori ;
Oono, Yasuhiro ;
Ikematsu, Hiroaki ;
Nomura, Shogo ;
Sato, Akihiro ;
Kojima, Motohiro ;
Esumi, Hiroyasu ;
Ochiai, Atsushi .
PLOS ONE, 2014, 9 (06)
[16]   Context encoding enables machine learning-based quantitative photoacoustics [J].
Kirchner, Thomas ;
Groehl, Janek ;
Maier-Hein, Lena .
JOURNAL OF BIOMEDICAL OPTICS, 2018, 23 (05)
[17]  
Kohl S. A. A., 2018, ARXIV180605034
[18]  
Lakshminarayanan B, 2017, ADV NEUR IN, V30
[19]   Leveraging uncertainty information from deep neural networks for disease detection [J].
Leibig, Christian ;
Allken, Vaneeda ;
Ayhan, Murat Seckin ;
Berens, Philipp ;
Wahl, Siegfried .
SCIENTIFIC REPORTS, 2017, 7
[20]   Why rankings of biomedical image analysis competitions should be interpreted with care [J].
Maier-Hein, Lena ;
Eisenmann, Matthias ;
Reinke, Annika ;
Onogur, Sinan ;
Stankovic, Marko ;
Scholz, Patrick ;
Arbel, Tal ;
Bogunovic, Hrvoje ;
Bradley, Andrew P. ;
Carass, Aaron ;
Feldmann, Carolin ;
Frangi, Alejandro F. ;
Full, Peter M. ;
van Ginneken, Bram ;
Hanbury, Allan ;
Honauer, Katrin ;
Kozubek, Michal ;
Landman, Bennett A. ;
Marz, Keno ;
Maier, Oskar ;
Maier-Hein, Klaus ;
Menze, Bjoern H. ;
Muller, Henning ;
Neher, Peter F. ;
Niessen, Wiro ;
Rajpoot, Nasir ;
Sharp, Gregory C. ;
Sirinukunwattana, Korsuk ;
Speidel, Stefanie ;
Stock, Christian ;
Stoyanov, Danail ;
Taha, Abdel Aziz ;
Van der Sommen, Fons ;
Wang, Ching-Wei ;
Weber, Marc-Andre ;
Zheng, Guoyan ;
Jannin, Pierre ;
Kopp-Schneider, Annette .
NATURE COMMUNICATIONS, 2018, 9