Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma

被引:4
作者
Ping, Shuai [1 ]
Gong, Ruining [1 ]
Lei, Ke [2 ]
Qing, Gong [1 ]
Zhang, Guangheng [3 ]
Chen, Jianghai [4 ]
机构
[1] Qingdao Univ, Affiliated Hosp, Med Res Ctr, Tumor Immunol & Cytotherapy,Dept Gastroenterol, 1677 Wutaishan Rd, Qingdao 266000, Peoples R China
[2] Qingdao Univ, Affiliated Hosp, Med Res Ctr, Tumor Immunol & Cytotherapy, 1677 Wutaishan Rd, Qingdao 266000, Peoples R China
[3] Huazhong Univ Sci & Technol, Liyuan Hosp, Tongji Med Coll, Dept Orthpaed, Wuhan 430077, Peoples R China
[4] Huazhong Univ Sci & Technol, Union Hosp, Tongji Med Coll, Dept Hand Surg, Wuhan 430022, Hubei, Peoples R China
关键词
Ferroptosis; lncRNA; Melanoma; Prognosis; Tumor microenvironment; CANCER; BIOINFORMATICS; EXPRESSION; PROMOTES; PROLIFERATION; METASTASIS;
D O I
10.1007/s12672-022-00581-3
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Ferroptosis plays an important role in cancer. However, studies about ferroptosis-related lncRNAs (FRLs) in skin cutaneous melanoma (SKCM) are scarce. Moreover, the relationship between prognostic FRLs and tumor microenvironment (TME) in melanoma remains unclear. This study investigates the potential prognostic value of FRLs and their association with TME in SKCM. The RNA-sequencing data of SKCM were downloaded from The Cancer Genome Atlas (TCGA) database. Melanoma patients were randomly divided into training and testing groups in a 1:1 ratio. A signature composed of 19 FRLs was developed by the least absolute shrinkage and selection operator (LASSO) regression analysis to divide patients into a low-risk group with a better prognosis and a high-risk group with a poor prognosis. Multivariate Cox regression analysis suggested that the risk score was an independent prognostic factor. The Area Under Curve (AUC) value of the risk score reached 0.768 in the training group and 0.770 in the testing group. Subsequent analysis proved that immune-related signaling pathways were significantly enriched in the low-risk group. The tumor immune cell infiltration analysis demonstrated that melanoma in the high-risk group tended to be immunologically "cold". We identified a novel FRLs signature which could accurately predict the prognosis of patients with melanoma.
引用
收藏
页数:15
相关论文
共 68 条
  • [1] Ferroptosis at the crossroads of cancer-acquired drug resistance and immune evasion
    Angeli, Jose Pedro Friedmann
    Krysko, Dmitri, V
    Conrad, Marcus
    [J]. NATURE REVIEWS CANCER, 2019, 19 (07) : 405 - 414
  • [2] xCell: digitally portraying the tissue cellular heterogeneity landscape
    Aran, Dvir
    Hu, Zicheng
    Butte, Atul J.
    [J]. GENOME BIOLOGY, 2017, 18
  • [3] NON-CODING RNAs IN DEVELOPMENT AND DISEASE: BACKGROUND, MECHANISMS, AND THERAPEUTIC APPROACHES
    Beermann, Julia
    Piccoli, Maria-Teresa
    Viereck, Janika
    Thum, Thomas
    [J]. PHYSIOLOGICAL REVIEWS, 2016, 96 (04) : 1297 - 1325
  • [4] Intratumoral Approaches for the Treatment of Melanoma
    Bommareddy, Praveen K.
    Silk, Ann W.
    Kaufman, Howard L.
    [J]. CANCER JOURNAL, 2017, 23 (01) : 40 - 47
  • [5] A Marine Terpenoid, Heteronemin, Induces Both the Apoptosis and Ferroptosis of Hepatocellular Carcinoma Cells and Involves the ROS and MAPK Pathways
    Chang, Wen-Tsan
    Bow, Yung-Ding
    Fu, Pei-Jung
    Li, Chia-Yang
    Wu, Chang-Yi
    Chang, Yi-Hua
    Teng, Yen-Ni
    Li, Ruei-Nian
    Lu, Mei-Chin
    Liu, Yi-Chang
    Chiu, Chien-Chih
    [J]. OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, 2021, 2021
  • [6] Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade
    Charoentong, Pornpimol
    Finotello, Francesca
    Angelova, Mihaela
    Mayer, Clemens
    Efremova, Mirjana
    Rieder, Dietmar
    Hackl, Hubert
    Trajanoski, Zlatko
    [J]. CELL REPORTS, 2017, 18 (01): : 248 - 262
  • [7] Genomic Analysis of Tumor Microenvironment Immune Types across 14 Solid Cancer Types: Immunotherapeutic Implications
    Chen, Yu-Pei
    Zhang, Yu
    Lv, Jia-Wei
    Li, Ying-Qin
    Wang, Ya-Qin
    He, Qing-Mei
    Yang, Xiao-Jing
    Sun, Ying
    Mao, Yan-Ping
    Yun, Jing-Ping
    Liu, Na
    Ma, Jun
    [J]. THERANOSTICS, 2017, 7 (14): : 3585 - 3594
  • [8] Identification and Validation of an 11-Ferroptosis Related Gene Signature and Its Correlation With Immune Checkpoint Molecules in Glioma
    Chen, Zhuohui
    Wu, Tong
    Yan, Zhouyi
    Zhang, Mengqi
    [J]. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2021, 9
  • [9] Medical bioinformatics in melanoma
    Cheng, Phil F.
    [J]. CURRENT OPINION IN ONCOLOGY, 2018, 30 (02) : 113 - 117
  • [10] Bioinformatics and cancer target discovery
    Desany, B
    Zhang, ZM
    [J]. DRUG DISCOVERY TODAY, 2004, 9 (18) : 795 - 802