Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

被引:119
作者
Farnelid, Hanna [1 ]
Bentzon-Tilia, Mikkel [2 ]
Andersson, Anders F. [3 ]
Bertilsson, Stefan [4 ]
Jost, Guenter [5 ]
Labrenz, Matthias [5 ]
Juergens, Klaus [5 ]
Riemann, Lasse [1 ,2 ]
机构
[1] Linnaeus Univ, Dept Nat Sci, Kalmar, Sweden
[2] Univ Copenhagen, Dept Biol, Marine Biol Sect, DK-3000 Helsingor, Denmark
[3] KTH Royal Inst Technol, Sci Life Lab, Sch Biotechnol, Div Gene Technol, Solna, Sweden
[4] Uppsala Univ, Dept Ecol & Genet, Uppsala, Sweden
[5] Leibniz Inst Baltic Sea Res Warnemunde IOW, Dept Biol Oceanog, Rostock, Germany
基金
瑞典研究理事会;
关键词
Baltic Sea; chemocline; nifH; nitrogen fixation; oxic-anoxic interface; pyrosequencing; N-2; FIXATION; NIFH GENES; WATERS; DIVERSITY; DIAZOTROPHS; PHYLOTYPES; BACTERIOPLANKTON; AMPLIFICATION; DISTRIBUTIONS; CYANOBACTERIA;
D O I
10.1038/ismej.2013.26
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
The Baltic Sea receives large nitrogen inputs by diazotrophic (N-2-fixing) heterocystous cyanobacteria but the significance of heterotrophic N-2 fixation has not been studied. Here, the diversity, abundance and transcription of the nifH fragment of the nitrogenase enzyme in two basins of the Baltic Sea proper was examined. N-2 fixation was measured at the surface (5 m) and in anoxic water (200 m). Vertical sampling profiles of >10 and <10 mu m size fractions were collected in 2007, 2008 and 2011 at the Gotland Deep and in 2011 in the Bornholm Basin. Both of these stations are characterized by permanently anoxic bottom water. The 454-pyrosequencing nifH analysis revealed a diverse assemblage of nifH genes related to alpha-, beta- and gammaproteobacteria (nifH cluster I) and anaerobic bacteria (nifH cluster III) at and below the chemocline. Abundances of genes and transcripts of seven diazotrophic phylotypes were investigated using quantitative polymerase chain reaction revealing abundances of heterotrophic nifH phylotypes of up to 2.1 x 10(7) nifH copies l(-1). Abundant nifH transcripts (up to 3.2 x 10(4) transcripts l(-1)) within nifH cluster III and co-occurring N-2 fixation (0.44 +/- 0.26 nmol l(-1) day(-1)) in deep water suggests that heterotrophic diazotrophs are fixing N2 in anoxic ammonium-rich waters. Our results reveal that N-2 fixation in the Baltic Sea is not limited to illuminated N-deplete surface waters and suggest that N-2 fixation could also be of importance in other suboxic regions of the world's oceans.
引用
收藏
页码:1413 / 1423
页数:11
相关论文
共 56 条
[1]   Nodularia sp nifH gene transcripts in the Baltic Sea proper [J].
Bostrom, Kjarstin H. ;
Riemann, Lasse ;
Zweifel, Ulla Li ;
Hagstrom, Ake .
JOURNAL OF PLANKTON RESEARCH, 2007, 29 (04) :391-399
[2]   Isolation and gene quantification of heterotrophic N2-fixing bacterioplankton in the Baltic Sea [J].
Bostrom, Kjarstin H. ;
Riemann, Lasse ;
Kuhl, Michael ;
Hagstrom, Ake .
ENVIRONMENTAL MICROBIOLOGY, 2007, 9 (01) :152-164
[3]   Molecular evidence for zooplankton-associated nitrogen-fixing anaerobes based on amplification of the nifH gene [J].
Braun, ST ;
Proctor, LM ;
Zani, S ;
Mellon, MT ;
Zehr, JP .
FEMS MICROBIOLOGY ECOLOGY, 1999, 28 (03) :273-279
[4]  
CHAO A, 1984, SCAND J STAT, V11, P265
[5]   Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227 [J].
Chien, YT ;
Zinder, SH .
JOURNAL OF BACTERIOLOGY, 1996, 178 (01) :143-148
[6]   Vertical distributions of nitrogen-fixing phylotypes at Stn ALOHA in the oligotrophic North Pacific Ocean [J].
Church, MJ ;
Jenkins, BD ;
Karl, DM ;
Zehr, JP .
AQUATIC MICROBIAL ECOLOGY, 2005, 38 (01) :3-14
[7]   Hypoxia in the Baltic Sea and basin-scale changes in phosphorus biogeochemistry [J].
Conley, DJ ;
Humborg, C ;
Rahm, L ;
Savchuk, OP ;
Wulff, F .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2002, 36 (24) :5315-5320
[8]   Genetic regulation of biological nitrogen fixation [J].
Dixon, R ;
Kahn, D .
NATURE REVIEWS MICROBIOLOGY, 2004, 2 (08) :621-631
[9]   Nitrogenase Gene Amplicons from Global Marine Surface Waters Are Dominated by Genes of Non-Cyanobacteria [J].
Farnelid, Hanna ;
Andersson, Anders F. ;
Bertilsson, Stefan ;
Abu Al-Soud, Waleed ;
Hansen, Lars H. ;
Sorensen, Soren ;
Steward, Grieg F. ;
Hagstrom, Ake ;
Riemann, Lasse .
PLOS ONE, 2011, 6 (04)
[10]   Identity and dynamics of putative N2-fixing picoplankton in the Baltic Sea proper suggest complex patterns of regulation [J].
Farnelid, Hanna ;
Oeberg, Tomas ;
Riemann, Lasse .
ENVIRONMENTAL MICROBIOLOGY REPORTS, 2009, 1 (02) :145-154