Gene Mining for Proline Based Signaling Proteins in Cell Wall of Arabidopsis thaliana

被引:13
|
作者
Ihsan, Muhammad Z. [1 ]
Ahmad, Samina J. N. [2 ,3 ]
Shah, Zahid Hussain [4 ]
Rehman, Hafiz M. [5 ]
Aslam, Zubair [6 ]
Ahuja, Ishita [7 ]
Bones, Atle M. [7 ]
Ahmad, Jam N. [2 ,3 ]
机构
[1] Islamia Univ Bahawalpur, Cholistan Inst Desert Studies, Bahawalpur, Pakistan
[2] Univ Agr Faisalabad, Dept Bot, Plant Stress Physiol & Mol Biol Lab, Faisalabad, Pakistan
[3] Univ Agr Faisalabad, Dept Entomol, Integrated Genom Cellular Dev & Biotechnol Lab, Faisalabad, Pakistan
[4] King Abdulaziz Univ, Fac Meteorol, Dept Arid Land Agr, Jeddah, Saudi Arabia
[5] Chonnam Natl Univ, Dept Elect & Biomed Engn, Gwangju, South Korea
[6] Univ Agr Faisalabad, Dept Agron, Faisalabad, Pakistan
[7] Norwegian Univ Sci & Technol, Dept Biol, Trondheim, Norway
来源
FRONTIERS IN PLANT SCIENCE | 2017年 / 8卷
关键词
Arabidopsis; co-expression; geneMANIA; GENEVESTIGATOR; kinase; proline; GLYCINE-RICH PROTEINS; RNA-BINDING PROTEIN; ARABINOGALACTAN-PROTEINS; SALT STRESS; EMBRYO DEVELOPMENT; HIGH-TEMPERATURE; ABIOTIC STRESS; RHT ALLELES; TUBE GROWTH; KINASE GENE;
D O I
10.3389/fpls.2017.00233
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The cell wall (CW) as a first line of defense against biotic and abiotic stresses is of primary importance in plant biology. The proteins associated with cell walls play a significant role in determining a plant's sustainability to adverse environmental conditions. In this work, the genes encoding cell wall proteins (CWPs) in Arabidopsis were identified and functionally classified using geneMANIA and GENEVESTIGATOR with published microarrays data. This yielded 1605 genes, out of which 58 genes encoded proline-rich proteins (PRPs) and glycine-rich proteins (GRPs). Here, we have focused on the cellular compartmentalization, biological processes, and molecular functioning of proline-rich CWPs along with their expression at different plant developmental stages. The mined genes were categorized into five classes on the basis of the type of PRPs encoded in the cell wall of Arabidopsis thaliana. We review the domain structure and function of each class of protein, many with respect to the developmental stages of the plant. We have then used networks, hierarchical clustering and correlations to analyze co-expression, co-localization, genetic, and physical interactions and shared protein domains of these PRPs. This has given us further insight into these functionally important CWPs and identified a number of potentially new cell-wall related proteins in A. thaliana.
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页数:19
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