Electron density analysis of large (molecular and periodic) systems: A parallel implementation

被引:46
|
作者
Casassa, Silvia [1 ,2 ]
Erba, Alessandro [1 ,2 ]
Baima, Jacopo [1 ,2 ]
Orlando, Roberto [1 ,2 ]
机构
[1] Univ Turin, Dipartimento Chim, I-10125 Turin, Italy
[2] Ctr Excellence, Nanostruct Interfaces & Surfaces, I-10125 Turin, Italy
关键词
topological analysis; Bader; parallelism; ab initio; Crystal program; GENERALIZED GRADIENT APPROXIMATION; MAXIMUM PROBABILITY DOMAINS; FUNCTIONAL APPROXIMATIONS; CHARGE-DENSITY; EXCHANGE; CRYSTALS; THERMOCHEMISTRY; ELEMENTS; CRAMBIN; POINTS;
D O I
10.1002/jcc.24033
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A parallel implementation is presented of a series of algorithms for the evaluation of several one-electron properties of large molecular and periodic (of any dimensionality) systems. The electron charge and momentum densities of the system, the electrostatic potential, X-ray structure factors, directional Compton profiles can be effectively evaluated at low computational cost along with a full topological analysis of the electron charge density (ECD) of the system according to Bader's quantum theory of atoms in molecules. The speedup of the parallelization of the different algorithms is presented. The search of all symmetry-irreducible critical points of the ECD of the crystallized crambin protein and the evaluation of all the corresponding bond paths, for instance, would require about 32 days if run in serial mode and reduces to less than 2 days when run in parallel mode over 32 processors. (c) 2015 Wiley Periodicals, Inc.
引用
收藏
页码:1940 / 1946
页数:7
相关论文
共 50 条
  • [31] Continuation of Bifurcations of Periodic Orbits for Large-Scale Systems
    Net, M.
    Sanchez, J.
    SIAM JOURNAL ON APPLIED DYNAMICAL SYSTEMS, 2015, 14 (02): : 674 - 698
  • [32] Interesting Properties of Thomas-Fermi Kinetic and Parr Electron-Electron-Repulsion DFT Energy Functional Generated Compact One-Electron Density Approximation for Ground-State Electronic Energy of Molecular Systems
    Kristyan, Sandor
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (09) : 1445 - 1453
  • [33] Resolution of identity approximation for the Coulomb term in molecular and periodic systems
    Burow, Asbjoern M.
    Sierka, Marek
    Mohamed, Fawzi
    JOURNAL OF CHEMICAL PHYSICS, 2009, 131 (21)
  • [34] Lp•••π Interactions involving π-systems with different degrees of electron density delocalization: uracil and isocyanurate
    Voronina, Ju. K.
    Litvinov, I. A.
    RUSSIAN CHEMICAL BULLETIN, 2015, 64 (11) : 2615 - 2621
  • [35] Electron Pair Density Information Measures in Atomic Systems
    Sagar, Robin P.
    Laguna, Humberto G.
    Guevara, Nicolais L.
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2011, 111 (14) : 3497 - 3504
  • [36] Topological Electron Density Analysis and Electrostatic Properties of Aspirin: An Experimental and Theoretical Study
    Arputharaj, David Stephen
    Hathwar, Venkatesha R.
    Row, Tayur N. Guru
    Kumaradhas, Poomani
    CRYSTAL GROWTH & DESIGN, 2012, 12 (09) : 4357 - 4366
  • [37] On the conformation, molecular interactions and electron density of a natural flavonoid derivative
    Niquini, Fabiano M.
    Tenorio, Juan C.
    da Silva, Maria F. G. F.
    Ribeiro, Alan B.
    Wanderley, Adilson
    Ellena, Javier
    Correa, Rodrigo S.
    JOURNAL OF MOLECULAR STRUCTURE, 2020, 1220
  • [38] How good are recent density functionals for ground and excited states of one-electron systems?
    Schwalbe, Sebastian
    Trepte, Kai
    Lehtola, Susi
    JOURNAL OF CHEMICAL PHYSICS, 2022, 157 (17)
  • [39] Long-range corrected fragment molecular orbital density functional tight-binding method for excited states in large molecular systems
    Einsele, Richard
    Hoche, Joscha
    Mitric, Roland
    JOURNAL OF CHEMICAL PHYSICS, 2023, 158 (04)
  • [40] Cluster-in-Molecule Local Correlation Method for Dispersion Interactions in Large Systems and Periodic Systems
    Li, Wei
    Wang, Yuqi
    Ni, Zhigang
    Li, Shuhua
    ACCOUNTS OF CHEMICAL RESEARCH, 2023, 56 (23) : 3462 - 3474