SIMPLIFYING THE JACOBIAN CRITERION FOR PRECLUDING MULTISTATIONARITY IN CHEMICAL REACTION NETWORKS

被引:21
作者
Joshi, Badal [1 ]
Shiu, Anne [2 ]
机构
[1] Duke Univ, Dept Math, Durham, NC 27708 USA
[2] Univ Chicago, Dept Math, Chicago, IL 60637 USA
基金
美国国家科学基金会;
关键词
chemical reaction networks; mass-action kinetics; multiple steady states; Jacobian criterion; injectivity; species-reaction graph; MULTIPLE EQUILIBRIA; REACTION SYSTEMS; STEADY-STATES; INJECTIVITY; STABILITY; GRAPH;
D O I
10.1137/110837206
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Chemical reaction networks taken with mass-action kinetics are dynamical systems that arise in chemical engineering and systems biology. In general, determining whether a chemical reaction network admits multiple steady states is difficult, as this requires determining existence of multiple positive solutions to a large system of polynomials with unknown coefficients. However, in certain cases, various easy criteria can be applied. One such test is the Jacobian criterion, due to Craciun and Feinberg, which gives sufficient conditions for ruling out the possibility of multiple steady states. A chemical reaction network is said to pass the Jacobian criterion if all terms in the determinant expansion of its parametrized Jacobian matrix have the same sign. In this article, we present a procedure which simplifies the application of the Jacobian criterion, and as a result, we identify a new class of networks for which multiple steady states is precluded: those in which all chemical species have total molecularity of at most two. The total molecularity of a species refers to the sum of all of its stoichiometric coefficients in the network. We illustrate our results by examining enzyme catalysis networks.
引用
收藏
页码:857 / 876
页数:20
相关论文
共 26 条
[1]  
Banaji M, 2009, COMMUN MATH SCI, V7, P867
[2]   Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems [J].
Banaji, Murad ;
Craciun, Gheorghe .
ADVANCES IN APPLIED MATHEMATICS, 2010, 44 (02) :168-184
[3]   P matrix properties, injectivity, and stability in chemical reaction systems [J].
Banaji, Murad ;
Donnell, Pete ;
Baigent, Stephen .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2007, 67 (06) :1523-1547
[4]   Subnetwork analysis reveals dynamic features of complex (bio)chemical networks [J].
Conradi, Carsten ;
Flockerzi, Dietrich ;
Raisch, Jorg ;
Stelling, Jorg .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (49) :19175-19180
[5]   Multiple equilibria in complex chemical reaction networks: extensions to entrapped species models [J].
Craciun, G. ;
Feinberg, M. .
IEE PROCEEDINGS SYSTEMS BIOLOGY, 2006, 153 (04) :179-186
[6]   Multiple equilibria in complex chemical reaction networks: I. The injectivity property [J].
Craciun, G ;
Feinberg, M .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2005, 65 (05) :1526-1546
[7]   Multiple equilibria in complex chemical reaction networks: II. The species-reaction graph [J].
Craciun, Gheorghe ;
Feinberg, Martin .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2006, 66 (04) :1321-1338
[8]   Understanding bistability in complex enzyme-driven reaction networks [J].
Craciun, Gheorghe ;
Tang, Yangzhong ;
Feinberg, Martin .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (23) :8697-8702
[9]   MULTIPLE EQUILIBRIA IN COMPLEX CHEMICAL REACTION NETWORKS: SEMIOPEN MASS ACTION SYSTEMS [J].
Craciun, Gheorghe ;
Feinberg, Martin .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2010, 70 (06) :1859-1877
[10]   Homotopy methods for counting reaction network equilibria [J].
Craciun, Gheorghe ;
Helton, J. William ;
Williams, Ruth J. .
MATHEMATICAL BIOSCIENCES, 2008, 216 (02) :140-149