Isolation and characterization of eighteen polymorphic microsatellite loci for the topical seagrass, Syringodium isoetifolium

被引:5
作者
Wainwright, Benjamin J. [1 ]
Arlyza, Irma S. [2 ]
Karl, Stephen A. [1 ]
机构
[1] Univ Hawaii Manoa, Hawaii Inst Marine Biol, Kaneohe, HI 96744 USA
[2] Indonesian Inst Sci, Res Ctr Oceanog, Jakarta 14430, Indonesia
关键词
Connectivity; Gene flow; Indonesia; Conservation; ABUNDANCE; PRIMERS;
D O I
10.1007/s12686-013-9938-0
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Eighteen polymorphic microsatellite loci were developed for the tropical seagrass, Syringodium isoetifolium. Microsatellite enriched genomic libraries were constructed and subsequently sequenced using Pacific Biosciences SMRT technology. The 18 loci were characterized in 24 individuals from the Indonesian archipelago. Observed levels of heterozygosity ranged from 0.14 to 0.91 with a mean of 3.7 alleles per locus. Four pairs of loci showed evidence of significant linkage disequilibrium and one locus deviated significantly from Hardy-Weinberg expectations.
引用
收藏
页码:943 / 945
页数:3
相关论文
共 13 条
[1]  
[Anonymous], 2010, Geneious v5.5
[2]   The value of estuarine and coastal ecosystem services [J].
Barbier, Edward B. ;
Hacker, Sally D. ;
Kennedy, Chris ;
Koch, Evamaria W. ;
Stier, Adrian C. ;
Silliman, Brian R. .
ECOLOGICAL MONOGRAPHS, 2011, 81 (02) :169-193
[3]   M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods [J].
Boutin-Ganache, I ;
Raposo, M ;
Raymond, M ;
Deschepper, CF .
BIOTECHNIQUES, 2001, 31 (01) :24-+
[4]  
Curran S, 2002, AMBIO, V31, P264, DOI 10.1579/0044-7447-31.4.264
[5]   Links between humans and seagrasses -: an example from tropical East Africa [J].
de la Torre-Castro, M ;
Rönnbäck, P .
OCEAN & COASTAL MANAGEMENT, 2004, 47 (7-8) :361-387
[6]   Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows [J].
Excoffier, Laurent ;
Lischer, Heidi E. L. .
MOLECULAR ECOLOGY RESOURCES, 2010, 10 (03) :564-567
[7]   Isolating microsatellite DNA loci [J].
Glenn, TC ;
Schable, NA .
MOLECULAR EVOLUTION: PRODUCING THE BIOCHEMICAL DATA, PART B, 2005, 395 :202-222
[8]   COMPOSITION, ABUNDANCE, BIOMASS, AND PRODUCTION OF MACROFAUNA IN A NEW-ENGLAND ESTUARY - COMPARISONS AMONG EELGRASS MEADOWS AND OTHER NURSERY HABITATS [J].
HECK, KL ;
ABLE, KW ;
ROMAN, CT ;
FAHAY, MP .
ESTUARIES, 1995, 18 (02) :379-389
[9]   VARIATIONS IN STRUCTURE OF ESTUARINE FISH COMMUNITIES IN RELATION TO ABUNDANCE OF SUBMERSED VASCULAR PLANTS [J].
LUBBERS, L ;
BOYNTON, WR ;
KEMP, WM .
MARINE ECOLOGY PROGRESS SERIES, 1990, 65 (01) :1-14
[10]   QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects [J].
Meglecz, Emese ;
Costedoat, Caroline ;
Dubut, Vincent ;
Gilles, Andre ;
Malausa, Thibaut ;
Pech, Nicolas ;
Martin, Jean-Francois .
BIOINFORMATICS, 2010, 26 (03) :403-404