An i2b2-based, generalizable, open source, self-scaling chronic disease registry

被引:46
作者
Natter, Marc D. [1 ]
Quan, Justin
Ortiz, David M. [1 ]
Bousvaros, Athos [2 ]
Ilowite, Norman T. [3 ]
Inman, Christi J. [4 ]
Marsolo, Keith [5 ]
McMurry, Andrew J. [6 ]
Sandborg, Christy I. [7 ]
Schanberg, Laura E. [8 ]
Wallace, Carol A. [9 ]
Warren, Robert W. [10 ]
Weber, Griffin M.
Mandl, Kenneth D. [1 ,6 ]
机构
[1] Childrens Hosp Boston, Childrens Hosp Informat Program, Harvard MIT Hlth Sci & Technol, Boston, MA 02115 USA
[2] Childrens Hosp Boston, Dept Gastroenterol, Boston, MA 02115 USA
[3] Albert Einstein Coll Med, Dept Pediat, Bronx, NY 10467 USA
[4] Univ Utah, Dept Pediat, Salt Lake City, UT USA
[5] Cincinnati Childrens Med Ctr, Div Biomed Informat, Cincinnati, OH USA
[6] Harvard Univ, Sch Med, Ctr Biomed Informat, Boston, MA USA
[7] Stanford Univ, Dept Pediat, Sch Med, Stanford, CA 94305 USA
[8] Duke Univ, Med Ctr, Dept Pediat, Durham, NC 27710 USA
[9] Seattle Childrens Hosp & Res Inst, Dept Pediat, Seattle, WA USA
[10] Med Univ S Carolina, Dept Pediat, Charleston, SC 29425 USA
关键词
JUVENILE IDIOPATHIC ARTHRITIS; ALLIANCE CONSENSUS CONFERENCE; PUBLIC-HEALTH; ARCHITECTURE; DERMATOMYOSITIS; INFORMATICS; BEDSIDE; DESIGN; SYSTEM; CANCER;
D O I
10.1136/amiajnl-2012-001042
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Objective Registries are a well-established mechanism for obtaining high quality, disease-specific data, but are often highly project-specific in their design, implementation, and policies for data use. In contrast to the conventional model of centralized data contribution, warehousing, and control, we design a self-scaling registry technology for collaborative data sharing, based upon the widely adopted Integrating Biology & the Bedside (i2b2) data warehousing framework and the Shared Health Research Information Network (SHRINE) peer-to-peer networking software. Materials and methods Focusing our design around creation of a scalable solution for collaboration within multi-site disease registries, we leverage the i2b2 and SHRINE open source software to create a modular, ontology-based, federated infrastructure that provides research investigators full ownership and access to their contributed data while supporting permissioned yet robust data sharing. We accomplish these objectives via web services supporting peer-group overlays, group-aware data aggregation, and administrative functions. Results The 56-site Childhood Arthritis & Rheumatology Research Alliance (CARRA) Registry and 3-site Harvard Inflammatory Bowel Diseases Longitudinal Data Repository now utilize i2b2 self-scaling registry technology (i2b2-SSR). This platform, extensible to federation of multiple projects within and between research networks, encompasses >6000 subjects at sites throughout the USA. Discussion We utilize the i2b2-SSR platform to minimize technical barriers to collaboration while enabling fine-grained control over data sharing. Conclusions The implementation of i2b2-SSR for the multi-site, multi-stakeholder CARRA Registry has established a digital infrastructure for community-driven research data sharing in pediatric rheumatology in the USA. We envision i2b2-SSR as a scalable, reusable solution facilitating interdisciplinary research across diseases.
引用
收藏
页码:172 / 179
页数:8
相关论文
共 43 条
[1]  
[Anonymous], 2011, Digital infrastructure for the learning health system: The foundation for continuous improvement in health and health care
[2]  
[Anonymous], 2012, R: A Language and Environment for Statistical Computing
[3]   Implementation of a shared data repository and common data dictionary for fetal alcohol spectrum disorders research [J].
Arenson, Andrew D. ;
Bakhireva, Ludmila N. ;
Chambers, Christina D. ;
Deximo, Christina A. ;
Foroud, Tatiana ;
Jacobson, Joseph L. ;
Jacobson, Sandra W. ;
Jones, Kenneth Lyons ;
Mattson, Sarah N. ;
May, Philip A. ;
Moore, Elizabeth S. ;
Ogle, Kimberly ;
Riley, Edward P. ;
Robinson, Luther K. ;
Rogers, Jeffrey ;
Streissguth, Ann P. ;
Tavares, Michel C. ;
Urbanski, Joseph ;
Yezerets, Yelena ;
Surya, Radha ;
Stewart, Craig A. ;
Barnett, William K. .
ALCOHOL, 2010, 44 (7-8) :643-647
[4]   2011 American College of Rheumatology Recommendations for the Treatment of Juvenile Idiopathic Arthritis: Initiation and Safety Monitoring of Therapeutic Agents for the Treatment of Arthritis and Systemic Features [J].
Beukelman, Timothy ;
Patkar, Nivedita M. ;
Saag, Kenneth G. ;
Tolleson-Rinehart, Sue ;
Cron, Randy Q. ;
DeWitt, Esi Morgan ;
Ilowite, Norman T. ;
Kimura, Yukiko ;
Laxer, Ronald M. ;
Lovell, Daniel J. ;
Martini, Alberto ;
Rabinovich, C. Egla ;
Ruperto, Nicolino .
ARTHRITIS CARE & RESEARCH, 2011, 63 (04) :465-482
[5]  
Biomedical Informatics Research Network (BIRN), HISTORY BIOMEDICAL I
[6]  
Blackstone EH, 2011, LEARNING WHAT WORKS, P123
[7]  
CARRA Policies, CHILDHOOD ARTHRITIS
[8]   Design considerations, architecture, and use of the Mini-Sentinel distributed data system [J].
Curtis, Lesley H. ;
Weiner, Mark G. ;
Boudreau, Denise M. ;
Cooper, William O. ;
Daniel, Gregory W. ;
Nair, Vinit P. ;
Raebel, Marsha A. ;
Beaulieu, Nicolas U. ;
Rosofsky, Robert ;
Woodworth, Tiffany S. ;
Brown, Jeffrey S. .
PHARMACOEPIDEMIOLOGY AND DRUG SAFETY, 2012, 21 :23-31
[9]   Consensus treatment plans for new-onset systemic juvenile idiopathic arthritis [J].
Dewitt, Esi Morgan ;
Kimura, Yukiko ;
Beukelman, Timothy ;
Nigrovic, Peter A. ;
Onel, Karen ;
Prahalad, Sampath ;
Schneider, Rayfel ;
Stoll, Matthew L. ;
Angeles-Han, Sheila ;
Milojevic, Diana ;
Schikler, Kenneth N. ;
Vehe, Richard K. ;
Weiss, Jennifer E. ;
Weiss, Pamela ;
Ilowite, Norman T. ;
Wallace, Carol A. .
ARTHRITIS CARE & RESEARCH, 2012, 64 (07) :1001-1010
[10]  
Freudenheim M, 2009, NEW YORK THE NEW YOR