Transcriptome analysis of mantle tissues reveals potential biomineralization-related genes in Tectus pyramis Born

被引:9
作者
Shi, Yu [1 ]
Xu, Meng [1 ]
Huang, Jing [1 ]
Zhang, Hua [1 ]
Liu, Wenguang [1 ]
Ou, Zekui [1 ]
He, Maoxian [1 ]
机构
[1] Chinese Acad Sci, South China Sea Inst Oceanol, CAS Key Lab Trop Marine Bioresources & Ecol, Guangdong Prov Key Lab Appl Marine Biol, 164 West Xingang Rd, Guangzhou 510301, Guangdong, Peoples R China
来源
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS | 2019年 / 29卷
关键词
Tectus pyramis; Transcriptome; Biomineralization; Mantle tissue; qPCR; Phylogenetic analysis; OYSTER PINCTADA-MARTENSII; PEARL OYSTER; CARBONIC-ANHYDRASE; SHELL FORMATION; NACREOUS LAYER; PROTEIN; IDENTIFICATION; BMP; FAMILY; EXPRESSION;
D O I
10.1016/j.cbd.2018.11.010
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The marine mollusk Tectus pyramis is a valuable shellfish primarily distributed in the tropical waters of the South China Sea, as well as in the Indo-Pacific Ocean and areas near the southern portion of the Japanese Peninsula. Despite major economic interest in this mollusk, limited genomic resources are available for this species, which has prevented studies of the molecular mechanism, such as biomineralization. Here, we report the first comprehensive transcript dataset of T. pyramis mantle tissue. From a total of 16,801,141 reads, 173,671 unique transcripts were assembled, which provides new genomic resources for the understanding of biomineralization in T. pyramis. The most abundant unique sequences of the top 30 most highly expressed genes were annotated as shematrin, while other highly expressed genes included glycine-rich protein and shematrin-1. Based on transcriptome annotation and Gene Ontology classification, 130 biomineralization-related genes were found including members of the BMP (bone morphogenetic proteins), calmodulin, perlucin, and shematrin families, as well as mantle genes, nacrein, and MSI60. The results of qPCR showed that 14 of 24 examined genes were highly expressed in the mantle. A phylogenetic tree of BMP, perlucin, shematrin proteins revealed conservation of their structure and functions and indicated that some members participated in biomineralization in T. pyramis. Taken together, the results presented herein will be useful in studies of molecular mechanisms and pathways of biomineralization in T. pyramis, as well as provide new insight into the mechanisms of biomineralization in gastropods.
引用
收藏
页码:131 / 144
页数:14
相关论文
共 53 条
[1]   Mollusk shell formation: A source of new concepts for understanding biomineralization processes [J].
Addadi, L ;
Joester, D ;
Nudelman, F ;
Weiner, S .
CHEMISTRY-A EUROPEAN JOURNAL, 2006, 12 (04) :981-987
[2]  
Bahamonde ME, 2001, J BONE JOINT SURG AM, V83A, pS56
[3]  
Chen F.X., 2015, FISH MODERNIZATION, V42, P11
[4]   The Canonical BMP Signaling Pathway Plays a Crucial Part in Stimulation of Dentin Sialophosphoprotein Expression by BMP-2 [J].
Cho, Young-Dan ;
Yoon, Won-Joon ;
Woo, Kyung-Mi ;
Baek, Jeong-Hwa ;
Park, Joo-Cheol ;
Ryoo, Hyun-Mo .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (47) :36369-36376
[5]   Secretome Analysis of Human BMSCs and Identification of SMOC1 as an Important ECM Protein in Osteoblast Differentiation [J].
Choi, Young-Ae ;
Lim, Jiwon ;
Kim, Kyung Min ;
Acharya, Bodhraj ;
Cho, Je-Yoel ;
Bae, Yong-Chul ;
Shin, Hong-In ;
Kim, Shin-Yoon ;
Park, Eui Kyun .
JOURNAL OF PROTEOME RESEARCH, 2010, 9 (06) :2946-2956
[6]   Transcriptome Profiling Analysis on Whole Bodies of Microbial Challenged Eriocheir sinensis Larvae for Immune Gene Identification and SNP Development [J].
Cui, Zhaoxia ;
Li, Xihong ;
Liu, Yuan ;
Song, Chengwen ;
Hui, Min ;
Shi, Guohui ;
Luo, Danli ;
Li, Yingdong .
PLOS ONE, 2013, 8 (12)
[7]   Small-Scale Habitat Structure Modulates the Effects of No-Take Marine Reserves for Coral Reef Macroinvertebrates [J].
Dumas, Pascal ;
Jimenez, Haizea ;
Peignon, Christophe ;
Wantiez, Laurent ;
Adjeroud, Mehdi .
PLOS ONE, 2013, 8 (03)
[8]   Biomineral Proteins from Mytilus edulis Mantle Tissue Transcriptome [J].
Freer, Andy ;
Bridgett, Stephen ;
Jiang, Jiahong ;
Cusack, Maggie .
MARINE BIOTECHNOLOGY, 2014, 16 (01) :34-45
[9]   De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis [J].
Haas, Brian J. ;
Papanicolaou, Alexie ;
Yassour, Moran ;
Grabherr, Manfred ;
Blood, Philip D. ;
Bowden, Joshua ;
Couger, Matthew Brian ;
Eccles, David ;
Li, Bo ;
Lieber, Matthias ;
MacManes, Matthew D. ;
Ott, Michael ;
Orvis, Joshua ;
Pochet, Nathalie ;
Strozzi, Francesco ;
Weeks, Nathan ;
Westerman, Rick ;
William, Thomas ;
Dewey, Colin N. ;
Henschel, Robert ;
Leduc, Richard D. ;
Friedman, Nir ;
Regev, Aviv .
NATURE PROTOCOLS, 2013, 8 (08) :1494-1512
[10]   Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery [J].
Hale, Matthew C. ;
McCormick, Cory R. ;
Jackson, James R. ;
DeWoody, J. Andrew .
BMC GENOMICS, 2009, 10