Paenibacillus marinisediminis sp nov., a bacterium isolated from marine sediment

被引:11
作者
Lee, Hae-Won [1 ,2 ,3 ]
Roh, Seong Woon [1 ,2 ]
Yim, Kyung June [3 ]
Shin, Na-Ri [1 ,2 ]
Lee, Jina [1 ,2 ]
Whon, Tae Woong [1 ,2 ]
Kim, Joon Yong [1 ,2 ]
Hyun, Dong-Wook [1 ,2 ]
Kim, Daekyung [3 ]
Bae, Jin-Woo [1 ,2 ]
机构
[1] Kyung Hee Univ, Dept Life & Nanopharmaceut Sci, Seoul 130701, South Korea
[2] Kyung Hee Univ, Dept Biol, Seoul 130701, South Korea
[3] Korea Basic Sci Inst, Jeju Ctr, Cheju 690756, South Korea
基金
新加坡国家研究基金会;
关键词
bacterial taxonomy; marine sediment; Paenibacillus marinisediminis sp nov; SEQUENCES; PROPOSAL; PATTERN;
D O I
10.1007/s12275-013-3198-2
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-negative, nonmotile, endospore-forming, rod-shaped bacterial strain LHW35(T), which belonged to the genus Paenibacillus, was isolated from marine sediment collected from the south coast of the Republic of Korea. A phylogenetic analysis of 16S rRNA gene sequences indicated that strain LHW35(T) was most closely related to Paenibacillus taiwanensis G-soil-2-3(T) (97.2% similarity). The optimal growth conditions for strain LHW35(T) were 37A degrees C, pH 6.0, and 0% (w/v) NaCl. The main isoprenoid quinone was menaquinone-7 (MK-7) and the major polyamine was spermidine. The diamino acid present in the cell-wall peptidoglycan was meso-diaminopimelic acid. The major fatty acids were anteiso-C-15:0 and C-16:0. The polar lipids were phosphatidylethanolamine, phosphatidylglycerol, unidentified amino-hospholipids, unidentified phospholipids, and unidentified polar lipids. A DNA-DNA hybridization experiment using the type strain of P. taiwanensis indicated < 40% relatedness. The DNA G+C content was 45.0 mol%. Based on these phylogenetic, genomic, and phenotypic analyses, strain LHW35(T) should be classified as a novel species within the genus Paenibacillus, for which the name Paenibacillus marinisediminis sp. nov. is proposed. The type strain is LHW35(T) (=KACC 16317(T) =JCM 17886(T)).
引用
收藏
页码:312 / 317
页数:6
相关论文
共 30 条
[21]   THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES [J].
SAITOU, N ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) :406-425
[22]  
Schaeffer A B, 1933, Science, V77, P194, DOI 10.1126/science.77.1990.194
[23]   Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus [J].
Shida, O ;
Takagi, H ;
Kadowaki, K ;
Nakamura, LK ;
Komagata, K .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :289-298
[24]   Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR [J].
Suzuki, MT ;
Giovannoni, SJ .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1996, 62 (02) :625-630
[25]   MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods [J].
Tamura, Koichiro ;
Peterson, Daniel ;
Peterson, Nicholas ;
Stecher, Glen ;
Nei, Masatoshi ;
Kumar, Sudhir .
MOLECULAR BIOLOGY AND EVOLUTION, 2011, 28 (10) :2731-2739
[26]   Paenibacillus dendritiformis sp. nov., proposal for a new pattern-forming species and its localization within a phylogenetic cluster [J].
Tcherpakov, M ;
Ben-Jacob, E ;
Gutnick, DL .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1999, 49 :239-246
[27]   The use of semi-solid agar for the detection of bacterial motility [J].
Tittsler, RP ;
Sandholzer, LA .
JOURNAL OF BACTERIOLOGY, 1936, 31 (06) :575-580
[29]   REPORT OF THE AD-HOC-COMMITTEE ON RECONCILIATION OF APPROACHES TO BACTERIAL SYSTEMATICS [J].
WAYNE, LG ;
BRENNER, DJ ;
COLWELL, RR ;
GRIMONT, PAD ;
KANDLER, O ;
KRICHEVSKY, MI ;
MOORE, LH ;
MOORE, WEC ;
MURRAY, RGE ;
STACKEBRANDT, E ;
STARR, MP ;
TRUPER, HG .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1987, 37 (04) :463-464
[30]   Outlook for cellulase improvement: Screening and selection strategies [J].
Zhang, Y. -H. Percival ;
Himmel, Michael E. ;
Mielenz, Jonathan R. .
BIOTECHNOLOGY ADVANCES, 2006, 24 (05) :452-481